| The mzIdentML data standard version 1.2, supporting advances in proteome informatics JA Vizcaíno, G Mayer, SR Perkins, H Barsnes, M Vaudel, Y Perez-Riverol, ... Molecular & Cellular Proteomics, mcp. M117. 068429, 2017 | | 2017 |
| Discovering and linking public omics data sets using the Omics Discovery Index Y Perez-Riverol, M Bai, F da Veiga Leprevost, S Squizzato, YM Park, ... Nature biotechnology 35 (5), 406-409, 2017 | 5 | 2017 |
| Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation E Rahmani, N Zaitlen, Y Baran, C Eng, D Hu, J Galanter, S Oh, ... Nature Methods 14 (3), 218-219, 2017 | 1 | 2017 |
| Synthetic human proteomes for accelerating protein research Y Perez-Riverol, JA Vizcaíno Nature methods 14 (3), 240-242, 2017 | 1 | 2017 |
| A Golden Age for Working with Public Proteomics Data L Martens, JA Vizcaíno Trends in biochemical sciences, 2017 | 1 | 2017 |
| In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics E Audain, J Uszkoreit, T Sachsenberg, J Pfeuffer, X Liang, H Hermjakob, ... Journal of proteomics 150, 170-182, 2017 | 6 | 2017 |
| The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data. G Menschaert, X Wang, AR Jones, F Ghali, D Fenyo, V Olexiouk, B Zhang, ... bioRxiv, 152579, 2017 | | 2017 |
| Accurate And Fast Feature Selection Workflow For High-Dimensional Omics Data Y Perez-Riverol, M Kun, JA Vizcaino, MP Hitz, E Audain bioRxiv, 144162, 2017 | | 2017 |
| Proteome Informatics SJ Gaskell, B Ma, S Dasari, J Choudhary, A Jones, R Matthieson, ... Royal Society of Chemistry, 2016 | | 2016 |
| Data Formats of the Proteomics Standards Initiative JA Vizcaíno, S Perkins, AR Jones, EW Deutsch Proteome Informatics, 229-258, 2016 | | 2016 |
| The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition EW Deutsch, A Csordas, Z Sun, A Jarnuczak, Y Perez-Riverol, T Ternent, ... Nucleic acids research, gkw936, 2016 | 7 | 2016 |
| Detection of Missing Proteins Using the PRIDE Database as a Source of Mass Spectrometry Evidence A Garin-Muga, L Odriozola, A Martínez-Val, N del Toro, R Martínez, ... Journal of proteome research 15 (11), 4101-4115, 2016 | 3 | 2016 |
| Human proteome project mass spectrometry data interpretation guidelines 2.1 EW Deutsch, CM Overall, JE Van Eyk, MS Baker, YK Paik, ST Weintraub, ... Journal of proteome research 15 (11), 3961-3970, 2016 | 17 | 2016 |
| Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets J Griss, Y Perez-Riverol, S Lewis, DL Tabb, JA Dianes, N del-Toro, ... Nature methods 13 (8), 651-656, 2016 | 22 | 2016 |
| Ten simple rules for taking advantage of git and GitHub Y Perez-Riverol, L Gatto, R Wang, T Sachsenberg, J Uszkoreit, ... PLoS computational biology 12 (7), e1004947, 2016 | 6 | 2016 |
| Making sense of big data in health research: towards an EU action plan C Auffray, R Balling, I Barroso, L Bencze, M Benson, J Bergeron, ... Genome medicine 8 (1), 71, 2016 | 17 | 2016 |
| proBed: extension of the BED format for mapping peptides identified by mass spectrometry to a genome PSI Recommendation, PSIPI Workgroup, T Ternent, F Ghali, AR Jones, ... | | 2016 |
| Omics discovery index-discovering and linking public omics datasets Y Perez-Riverol, M Bai, F Leprevost, S Squizzato, YM Park, OK Haug, ... BioRxiv, 049205, 2016 | 5 | 2016 |
| PRIDE Inspector Toolsuite: Moving toward a universal visualization tool for proteomics data standard formats and quality assessment of ProteomeXchange datasets Y Perez-Riverol, QW Xu, R Wang, J Uszkoreit, J Griss, A Sanchez, ... Molecular & Cellular Proteomics 15 (1), 305-317, 2016 | 14 | 2016 |
| Exploring the potential of public proteomics data M Vaudel, K Verheggen, A Csordas, H Ræder, FS Berven, L Martens, ... Proteomics 16 (2), 214-225, 2016 | 16 | 2016 |