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Stephen J. Bush
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Alternative splicing and the evolution of phenotypic novelty
SJ Bush, L Chen, JM Tovar-Corona, AO Urrutia
Philosophical Transactions of the Royal Society B 372 (1713), 20150474, 2017
1762017
Correcting for differential transcript coverage reveals a strong relationship between alternative splicing and organism complexity
L Chen, SJ Bush, JM Tovar-Corona, A Castillo-Morales, AO Urrutia
Molecular biology and evolution 31 (6), 1402-1413, 2014
1552014
A high resolution atlas of gene expression in the domestic sheep (Ovis aries)
EL Clark, SJ Bush, MEB McCulloch, IL Farquhar, R Young, L Lefevre, ...
PLOS Genetics 13 (9), e1006997, 2017
1392017
Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines
SJ Bush, D Foster, DW Eyre, EL Clark, N De Maio, LP Shaw, N Stoesser, ...
Gigascience 9 (2), giaa007, 2020
112*2020
ADGRE1 (EMR1, F4/80) is a rapidly-evolving gene expressed in mammalian monocyte-macrophages
LA Waddell, L Lefevre, SJ Bush, A Raper, R Young, ZM Lisowski, ...
Frontiers in immunology 9, 2246, 2018
1062018
Network analysis of transcriptomic diversity amongst resident tissue macrophages and dendritic cells in the mouse mononuclear phagocyte system
KM Summers, SJ Bush, DA Hume
PLoS biology 18 (10), e3000859, 2020
1022020
Pleiotropic impacts of macrophage and microglial deficiency on development in rats with targeted mutation of the Csf1r locus
C Pridans, A Raper, GM Davis, J Alves, KA Sauter, L Lefevre, T Regan, ...
The Journal of Immunology 201 (9), 2683-2699, 2018
1022018
Characterisation of the British honey bee metagenome
T Regan, MW Barnett, DR Laetsch, SJ Bush, D Wragg, GE Budge, ...
Nature communications 9 (1), 4995, 2018
662018
The genomic architecture of mastitis resistance in dairy sheep
G Banos, G Bramis, SJ Bush, MEB McCulloch, EL Clark, J Smith, ...
BMC Genomics 18, 624, 2017
562017
CSF1R-dependent macrophages control postnatal somatic growth and organ maturation
S Keshvari, M Caruso, N Teakle, L Batoon, A Sehgal, OL Patkar, ...
PLoS Genetics 17 (6), e1009605, 2021
502021
Presence–Absence Variation in A. thaliana Is Primarily Associated with Genomic Signatures Consistent with Relaxed Selective Constraints
SJ Bush, A Castillo-Morales, JM Tovar-Corona, L Chen, PX Kover, ...
Molecular biology and evolution 31 (1), 59-69, 2014
452014
Species-specific transcriptional regulation of genes involved in nitric oxide production and arginine metabolism in macrophages
R Young, SJ Bush, L Lefevre, MEB McCulloch, ZM Lisowski, C Muriuki, ...
Immunohorizons 2 (1), 27-37, 2018
422018
A Gene Expression Atlas of the Domestic Water Buffalo (Bubalus bubalis)
R Young, L Lefevre, SJ Bush, A Joshi, SH Singh, SK Jadhav, ...
Frontiers in genetics 10, 668, 2019
392019
Integration of quantitated expression estimates from polyA-selected and rRNA-depleted RNA-seq libraries
SJ Bush, MEB McCulloch, KM Summers, DA Hume, EL Clark
BMC Bioinformatics 18, 301, 2017
352017
Characterization of subpopulations of chicken mononuclear phagocytes that express TIM4 and CSF1R
T Hu, Z Wu, SJ Bush, L Freem, L Vervelde, KM Summers, DA Hume, ...
The Journal of Immunology 202 (4), 1186-1199, 2019
342019
Large expert-curated database for benchmarking document similarity detection in biomedical literature search
P Brown, AC Tan, MA El-Esawi, T Liehr, O Blanck, DP Gladue, ...
Database 2019, 2019
342019
Analysis of homozygous and heterozygous Csf1r knockout in the rat as a model for understanding microglial function in brain development and the impacts of human CSF1R mutations
OL Patkar, M Caruso, N Teakle, S Keshvari, SJ Bush, C Pridans, A Belmer, ...
Neurobiology of disease 151, 105268, 2021
322021
Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome
SJ Bush, C Muriuki, MEB McCulloch, IL Farquhar, EL Clark, DA Hume
Genetics Selection Evolution 50, 1-17, 2018
322018
Optimization of next-generation sequencing transcriptome annotation for species lacking sequenced genomes
NF Ockendon, LA O'Connell, SJ Bush, J Monzón-Sandoval, H Barnes, ...
Molecular Ecology Resources, 2015
302015
Species-specificity of transcriptional regulation and the response to lipopolysaccharide in mammalian macrophages
SJ Bush, MEB McCulloch, ZM Lisowski, C Muriuki, EL Clark, R Young, ...
Frontiers in Cell and Developmental Biology 8, 661, 2020
292020
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