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Joe Parker
Joe Parker
Senior Research Fellow - National Biofilms Innovation Centre, University of Southampton
Verified email at kitson-consulting.co.uk - Homepage
Title
Cited by
Cited by
Year
Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty
J Parker, A Rambaut, OG Pybus
Infection, Genetics and Evolution 8 (3), 239-246, 2008
4622008
Genome-wide signatures of convergent evolution in echolocating mammals
J Parker, G Tsagkogeorga, JA Cotton, Y Liu, P Provero, E Stupka, ...
Nature 502 (7470), 228-231, 2013
3962013
Phylogenomic analyses elucidate the evolutionary relationships of bats
G Tsagkogeorga, J Parker, E Stupka, JA Cotton, SJ Rossiter
Current Biology 23 (22), 2262-2267, 2013
1752013
The mode and tempo of hepatitis C virus evolution within and among hosts
RR Gray, J Parker, P Lemey, M Salemi, A Katzourakis, OG Pybus
BMC evolutionary biology 11, 1-10, 2011
1592011
Field-based species identification of closely-related plants using real-time nanopore sequencing
J Parker, AJ Helmstetter, D Devey, T Wilkinson, AST Papadopulos
Scientific reports 7 (1), 8345, 2017
822017
Evolutionary and phylogenetic analysis of the hepaciviruses and pegiviruses
J Thézé, S Lowes, J Parker, OG Pybus
Genome Biology and Evolution 7 (11), 2996-3008, 2015
722015
Molecular epidemiology and phylogeny reveals complex spatial dynamics of endemic canine parvovirus
SR Clegg, KP Coyne, J Parker, S Dawson, SA Godsall, G Pinchbeck, ...
Journal of virology, JVI. 01576-10v1, 2011
66*2011
Diagnostic accuracy of loop-mediated isothermal amplification coupled to nanopore sequencing (LamPORE) for the detection of SARS-CoV-2 infection at scale in symptomatic and …
A Ptasinska, C Whalley, A Bosworth, C Poxon, C Bryer, N Machin, ...
Clinical microbiology and infection 27 (9), 1348. e1-1348. e7, 2021
392021
Safety and immunogenicity of novel recombinant BCG and modified vaccinia virus Ankara vaccines in neonate rhesus macaques
M Rosario, J Fulkerson, S Soneji, J Parker, EJ Im, N Borthwick, ...
Journal of virology 84 (15), 7815-7821, 2010
382010
Full-length characterization of hepatitis C virus subtype 3a reveals novel hypervariable regions under positive selection during acute infection
I Humphreys, V Fleming, P Fabris, J Parker, B Schulenberg, A Brown, ...
Journal of virology 83 (22), 11456-11466, 2009
372009
Estimating the date of origin of an HIV-1 circulating recombinant form
KK Tee, OG Pybus, J Parker, KP Ng, A Kamarulzaman, Y Takebe
Virology 387 (1), 229-234, 2009
322009
A framework for predicting soft-fruit yields and phenology using embedded, networked microsensors, coupled weather models and machine-learning techniques
MA Lee, A Monteiro, A Barclay, J Marcar, M Miteva-Neagu, J Parker
Computers and electronics in agriculture 168, 105103, 2020
252020
Rapid parallel adaptation to anthropogenic heavy metal pollution
AST Papadopulos, AJ Helmstetter, OG Osborne, AA Comeault, DP Wood, ...
Molecular biology and evolution 38 (9), 3724-3736, 2021
232021
Translational challenges and opportunities in biofilm science: a BRIEF for the future
CJ Highmore, G Melaugh, RJ Morris, J Parker, SOL Direito, M Romero, ...
npj Biofilms and Microbiomes 8 (1), 68, 2022
182022
Speciation processes in putative island endemic sister bat species: false impressions from mitochondrial DNA and microsatellite data
HC Kuo, SF Chen, YP Fang, JA Cotton, JD Parker, G Csorba, BK Lim, ...
Molecular Ecology 24 (23), 5910-5926, 2015
152015
Selected HIV-1 Env trimeric formulations act as potent immunogens in a rabbit vaccination model
L Heyndrickx, G Stewart-Jones, M Jansson, H Schuitemaker, E Bowles, ...
PloS one 8 (9), e74552, 2013
152013
Generation of neutralizing antibodies and divergence of SIVmac239 in cynomolgus macaques following short-term early antiretroviral therapy
G Özkaya Şahin, EJ Bowles, J Parker, H Uchtenhagen, E Sheik-Khalil, ...
PLoS pathogens 6 (9), e1001084, 2010
152010
Reverse-transcription loop-mediated isothermal amplification has high accuracy for detecting severe acute respiratory syndrome coronavirus 2 in saliva and nasopharyngeal …
SP Kidd, D Burns, B Armson, AD Beggs, ELA Howson, A Williams, G Snell, ...
The Journal of Molecular Diagnostics 24 (4), 320-336, 2022
92022
RT-LAMP has high accuracy for detecting SARS-CoV-2 in saliva and naso/oropharyngeal swabs from asymptomatic and symptomatic individuals
SP Kidd, D Burns, B Armson, AD Beggs, ELA Howson, A Williams, G Snell, ...
medRxiv, 2021.06. 28.21259398, 2021
52021
Rapid, raw-read reference and identification (R4IDs): A flexible platform for rapid generic species ID using long-read sequencing technology
J Parker, A Helmstetter, J Crowe, J Iacona, D Devey, AST Papadopulos
bioRxiv, 281048, 2018
22018
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