| ProteomeXchange provides globally coordinated proteomics data submission and dissemination JA Vizcaíno, EW Deutsch, R Wang, A Csordas, F Reisinger, D Rios, ... Nature biotechnology 32 (3), 223-226, 2014 | 1173 | 2014 |
| Mass spectral molecular networking of living microbial colonies J Watrous, P Roach, T Alexandrov, BS Heath, JY Yang, RD Kersten, ... Proceedings of the National Academy of Sciences 109 (26), E1743-E1752, 2012 | 312 | 2012 |
| The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search S Kim, N Mischerikow, N Bandeira, JD Navarro, L Wich, S Mohammed, ... Molecular & Cellular Proteomics 9 (12), 2840-2852, 2010 | 172 | 2010 |
| Protein identification by spectral networks analysis N Bandeira, D Tsur, A Frank, PA Pevzner Proceedings of the National Academy of Sciences 104 (15), 6140-6145, 2007 | 141 | 2007 |
| Interkingdom metabolic transformations captured by microbial imaging mass spectrometry WJ Moree, VV Phelan, CH Wu, N Bandeira, DS Cornett, BM Duggan, ... Proceedings of the National Academy of Sciences 109 (34), 13811-13816, 2012 | 128 | 2012 |
| Clustering millions of tandem mass spectra AM Frank, N Bandeira, Z Shen, S Tanner, SP Briggs, RD Smith, ... Journal of proteome research 7 (01), 113-122, 2007 | 124 | 2007 |
| MS/MS networking guided analysis of molecule and gene cluster families DD Nguyen, CH Wu, WJ Moree, A Lamsa, MH Medema, X Zhao, ... Proceedings of the National Academy of Sciences 110 (28), E2611-E2620, 2013 | 111 | 2013 |
| Molecular cartography of the human skin surface in 3D A Bouslimani, C Porto, CM Rath, M Wang, Y Guo, A Gonzalez, ... Proceedings of the National Academy of Sciences 112 (17), E2120-E2129, 2015 | 99 | 2015 |
| Spectral dictionaries integrating de novo peptide sequencing with database search of tandem mass spectra S Kim, N Gupta, N Bandeira, PA Pevzner Molecular & Cellular Proteomics 8 (1), 53-69, 2009 | 84 | 2009 |
| Target-decoy approach and false discovery rate: when things may go wrong N Gupta, N Bandeira, U Keich, PA Pevzner Journal of the American Society for Mass Spectrometry 22 (7), 1111-1120, 2011 | 79 | 2011 |
| Shotgun protein sequencing assembly of peptide tandem mass spectra from mixtures of modified proteins N Bandeira, KR Clauser, PA Pevzner Molecular & Cellular Proteomics 6 (7), 1123-1134, 2007 | 77 | 2007 |
| Automated de novo protein sequencing of monoclonal antibodies N Bandeira, V Pham, P Pevzner, D Arnott, JR Lill Nature biotechnology 26 (12), 1336-1338, 2008 | 74 | 2008 |
| Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ... Nature biotechnology 34 (8), 828-837, 2016 | 70 | 2016 |
| Dereplication and de novo sequencing of nonribosomal peptides J Ng, N Bandeira, WT Liu, M Ghassemian, TL Simmons, WH Gerwick, ... Nature methods 6 (8), 596-599, 2009 | 68 | 2009 |
| Fast multi-blind modification search through tandem mass spectrometry S Na, N Bandeira, E Paek Molecular & Cellular Proteomics 11 (4), M111. 010199, 2012 | 63 | 2012 |
| Peptide identification from mixture tandem mass spectra J Wang, J Pérez-Santiago, JE Katz, P Mallick, N Bandeira Molecular & Cellular Proteomics 9 (7), 1476-1485, 2010 | 60 | 2010 |
| Interpretation of tandem mass spectra obtained from cyclic nonribosomal peptides WT Liu, J Ng, D Meluzzi, N Bandeira, M Gutierrez, TL Simmons, ... Analytical chemistry 81 (11), 4200-4209, 2009 | 59 | 2009 |
| False discovery rates in spectral identification K Jeong, S Kim, N Bandeira BMC bioinformatics 13 (16), S2, 2012 | 58 | 2012 |
| Shotgun protein sequencing by tandem mass spectra assembly N Bandeira, H Tang, V Bafna, P Pevzner Analytical chemistry 76 (24), 7221-7233, 2004 | 57 | 2004 |
| Connecting chemotypes and phenotypes of cultured marine microbial assemblages by imaging mass spectrometry YL Yang, Y Xu, RD Kersten, WT Liu, MJ Meehan, BS Moore, N Bandeira, ... Angewandte Chemie International Edition 50 (26), 5839-5842, 2011 | 53 | 2011 |
