DIANA-microT web server: elucidating microRNA functions through target prediction M Maragkakis, M Reczko, VA Simossis, P Alexiou, GL Papadopoulos, ... Nucleic acids research, gkp292 | 274 | | 2009 |

Accurate microRNA target prediction correlates with protein repression levels M Maragkakis, P Alexiou, GL Papadopoulos, M Reczko, T Dalamagas, ... BMC bioinformatics 10 (1), 295 | 174 | | 2009 |

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support T Vergoulis, IS Vlachos, P Alexiou, G Georgakilas, M Maragkakis, ... Nucleic acids research 40 (D1), D222-D229 | 145 | | 2012 |

Performance comparison of pure MPI vs hybrid MPI-OpenMP parallelization models on SMP clusters N Drosinos, N Koziris Parallel and Distributed Processing Symposium, 2004. Proceedings. 18th ... | 57 | | 2004 |

An efficient algorithm for the physical mapping of clustered task graphs onto multiprocessor architectures N Koziris, M Romesis, P Tsanakas, G Papakonstantinou Parallel and Distributed Processing, 2000. Proceedings. 8th Euromicro ... | 53 | | 2000 |

Optimizing sparse matrix-vector multiplication using index and value compression K Kourtis, G Goumas, N Koziris Proceedings of the 5th conference on Computing frontiers, 87-96 | 50 | | 2008 |

Minimizing completion time for loop tiling with computation and communication overlapping G Goumas, A Sotiropoulos, N Koziris Parallel and Distributed Processing Symposium., Proceedings 15th ... | 44 | | 2001 |

Performance evaluation of the sparse matrix-vector multiplication on modern architectures G Goumas, K Kourtis, N Anastopoulos, V Karakasis, N Koziris The Journal of Supercomputing 50 (1), 36-77 | 42 | | 2009 |

Understanding the performance of sparse matrix-vector multiplication G Goumas, K Kourtis, N Anastopoulos, V Karakasis, N Koziris Parallel, Distributed and Network-Based Processing, 2008. PDP 2008. 16th ... | 38 | | 2008 |

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association M Maragkakis, T Vergoulis, P Alexiou, M Reczko, K Plomaritou, M Gousis, ... Nucleic acids research 39 (suppl 2), W145-W148 | 36 | | 2011 |

H2RDF: adaptive query processing on RDF data in the cloud. N Papailiou, I Konstantinou, D Tsoumakos, N Koziris Proceedings of the 21st international conference companion on World Wide Web ... | 35 | | 2012 |

An efficient code generation technique for tiled iteration spaces G Goumas, M Athanasaki, N Koziris Parallel and Distributed Systems, IEEE Transactions on 14 (10), 1021-1034 | 31 | | 2003 |

GridTorrent: Optimizing data transfers in the Grid with collaborative sharing A Zissimos, K Doka, A Chazapis, N Koziris 11th Panhellenic Conference on Informatics (PCI2007), Patras, Greece | 27 | | 2007 |

Optimal Scheduling for UET/UET-UCT Generalized< i> n</i>-Dimensional Grid Task Graphs T Andronikos, N Koziris, G Papakonstantinou, P Tsanakas Journal of Parallel and Distributed Computing 57 (2), 140-165 | 24 | | 1999 |

Distributed indexing of web scale datasets for the cloud I Konstantinou, E Angelou, D Tsoumakos, N Koziris Proceedings of the 2010 Workshop on Massive Data Analytics on the Cloud, 1 | 21 | | 2010 |

CSX: an extended compression format for spmv on shared memory systems K Kourtis, V Karakasis, G Goumas, N Koziris ACM SIGPLAN Notices 46 (8), 247-256 | 18 | | 2011 |

Memory and network bandwidth aware scheduling of multiprogrammed workloads on clusters of SMPs E Koukis, N Koziris Parallel and Distributed Systems, 2006. ICPADS 2006. 12th International ... | 18 | | 2006 |

Optimal scheduling for UET-UCT grids into fixed number of processors T Andronikos, N Koziris Parallel and Distributed Processing, 2000. Proceedings. 8th Euromicro ... | 18 | | 2000 |

Optimal time and efficient space free scheduling for nested loops N Koziris, G Papakonstantinou, P Tsanakas The Computer Journal 39 (5), 439-448 | 18 | | 1996 |

A comparative study of blocking storage methods for sparse matrices on multicore architectures V Karakasis, G Goumas, N Koziris Computational Science and Engineering, 2009. CSE'09. International ... | 17 | | 2009 |