| Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study TM Walker, TA Kohl, SV Omar, J Hedge, CDO Elias, P Bradley, Z Iqbal, ... The Lancet infectious diseases 15 (10), 1193-1202, 2015 | 616 | 2015 |
| Insidious Risk of Severe Mycobacterium chimaera Infection in Cardiac Surgery Patients M Chand, T Lamagni, K Kranzer, J Hedge, G Moore, S Parks, S Collins, ... Clinical infectious diseases 64 (3), 335-342, 2017 | 153 | 2017 |
| Evolutionary dynamics of local pandemic H1N1/2009 influenza virus lineages revealed by whole-genome analysis GJ Baillie, M Galiano, PM Agapow, R Myers, R Chiam, A Gall, AL Palser, ... Journal of virology 86 (1), 11-18, 2012 | 132 | 2012 |
| Efflux pump activity potentiates the evolution of antibiotic resistance across S. aureus isolates A Papkou, J Hedge, N Kapel, B Young, RC MacLean Nature communications 11 (1), 3970, 2020 | 96 | 2020 |
| Bacterial phylogenetic reconstruction from whole genomes is robust to recombination but demographic inference is not J Hedge, DJ Wilson MBio 5 (6), 10.1128/mbio. 02158-14, 2014 | 88 | 2014 |
| Evolutionary history of rabies in Ghana DTS Hayman, N Johnson, DL Horton, J Hedge, PR Wakeley, AC Banyard, ... PLoS Neglected Tropical Diseases 5 (4), e1001, 2011 | 74 | 2011 |
| Rapid evolution and host immunity drive the rise and fall of carbapenem resistance during an acute Pseudomonas aeruginosa infection R Wheatley, J Diaz Caballero, N Kapel, FHR De Winter, P Jangir, A Quinn, ... Nature Communications 12 (1), 2460, 2021 | 54 | 2021 |
| Whole genome sequencing and de novo assembly identifies Sydney-like variant noroviruses and recombinants during the winter 2012/2013 outbreak in England THN Wong, BL Dearlove, J Hedge, AP Giess, P Piazza, A Trebes, J Paul, ... Virology journal 10, 1-10, 2013 | 47 | 2013 |
| Real-time characterization of the molecular epidemiology of an influenza pandemic J Hedge, SJ Lycett, A Rambaut Biology letters 9 (5), 20130331, 2013 | 45 | 2013 |
| Practical approaches for detecting selection in microbial genomes J Hedge, DJ Wilson PLoS computational biology 12 (2), e1004739, 2016 | 30 | 2016 |
| Evolutionary Processes Driving the Rise and Fall of Staphylococcus aureus ST239, a Dominant Hybrid Pathogen JL Gill, J Hedge, DJ Wilson, RC MacLean MBio 12 (6), e02168-21, 2021 | 12 | 2021 |
| Emergence, dominance, and possible decline of CXCR4 chemokine receptor usage during the course of HIV infection CJ Meehan, JA Hedge, DL Robertson, GP McCormack, SAA Travers Journal of medical virology 82 (12), 2004-2012, 2010 | 7 | 2010 |
| Bacterial phylogenetic reconstruction from whole genomes is robust to recombination but demographic inference is not. mBio. 2014; 5 (6): e02158 J Hedge, DJ Wilson PubMed Abstract| Publisher Full Text| Free Full Text, 0 | 5 | |
| Mycobacterium chimaera isolates from heater–cooler units, United Kingdom J Hedge, T Lamagni, G Moore, J Walker, D Crook, M Chand Emerging Infectious Diseases 23 (7), 2017 | 4 | 2017 |
| Kohl Th. A., Omar Sh. V., Hedge J. et al. Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study TM Walker Lancet Infect. Dis 15, 1193-1202, 2015 | 2 | 2015 |
| Rapid evolution drives the rise and fall of carbapenem resistance during an acute Pseudomonas aeruginosa infection R Wheatley, JD Caballero, N Kapel, A Quinn, E del Barrio-Tofiño, ... bioRxiv, 2020.08. 10.243741, 2020 | | 2020 |
| Table S1-Evolutionary History of Rabies in Ghana DTS Hayman, N Johnson, DL Horton, J Hedge, PR Wakeley, AC Banyard, ... Figshare, 2015 | | 2015 |
| Molecular epidemiology and evolution of the 2009 H1N1 influenza A pandemic virus JA Hedge The University of Edinburgh, 2014 | | 2014 |
