| HIPPO: HIstogram-based Pseudo-POtential for scoring ssRNA-protein fragment-based docking poses A Kravchenko, SJ de Vries, M Smaïl-Tabbone, IC de Beauchene The 31st Annual Intelligent Systems For Molecular Biology (ISMB) and the …, 2023 | | 2023 |
| HIPPO: HIstogram-based Pseudo-POtential for scoring protein-ssRNA fragment-based docking poses A Kravchenko, SJ De Vries, M Smaïl-Tabbone, IC de Beauchene | | 2023 |
| Molecular-evaluated and explainable drug repurposing for COVID-19 using ensemble knowledge graph embedding MK Islam, D Amaya-Ramirez, B Maigret, MD Devignes, S Aridhi, ... Scientific Reports 13 (1), 3643, 2023 | | 2023 |
| Experiences with a training DSW knowledge model for early-stage researchers MD Devignes, M Smaïl-Tabbone, H Dhondge, R Dolcemascolo, ... Open Research Europe 3, 2023 | | 2023 |
| From quantitative SBML models to Boolean networks A Vaginay, T Boukhobza, M Smaïl-Tabbone Applied Network Science 7 (1), 1-23, 2022 | 1 | 2022 |
| Inductive database to support iterative data mining: Application to biomarker analysis on patient data in the Fight-HF project E Bresso, JP Ferreira, N Girerd, M Kobayashi, G Preud’homme, ... Journal of Biomedical Informatics 135, 104212, 2022 | 1 | 2022 |
| Optimizing scoring for ssRNA-protein docking models A Kravchenko, M Smail-Tabbone, IC de Beauchene, SJ de Vries 35th RHINE-KNEE-REGIONAL MEETING ON STRUCTURAL BIOLOGY, 2022 | | 2022 |
| New strategy for optimizing knowledge-based docking parameters: application to ssRNA-RRM docking A Kravchenko, M Smaïl-Tabbone, SJ de Vries, I Chauvot-de-Beauchêne RNAct Final Conference Tailoring RNA binding proteins and RNA targeting, 2022 | | 2022 |
| Negative sampling and rule mining for explainable link prediction in knowledge graphs MK Islam, S Aridhi, M Smail-Tabbone Knowledge-Based Systems 250, 109083, 2022 | 5 | 2022 |
| On the design of a similarity function for sparse binary data with application on protein function annotation MBA Veras, B Sarker, S Aridhi, JPP Gomes, JAF Macêdo, EM Nguifo, ... Knowledge-Based Systems 238, 107863, 2022 | 1 | 2022 |
| Machine learning-derived echocardiographic phenotypes predict heart failure incidence in asymptomatic individuals M Kobayashi, O Huttin, M Magnusson, JP Ferreira, E Bozec, AC Huby, ... Cardiovascular Imaging 15 (2), 193-208, 2022 | 32 | 2022 |
| Simple negative sampling for link prediction in knowledge graphs MK Islam, S Aridhi, M Smaïl-Tabbone Complex Networks & Their Applications X: Volume 2, Proceedings of the Tenth …, 2022 | 3 | 2022 |
| From competition to collaboration: Ensembling similarity-based heuristics for supervised link prediction in biological graphs MK Islam, S Aridhi, M Smail-Tabbone International Conference on Bangabandhu and Digital Bangladesh, 121-135, 2021 | | 2021 |
| GPER agonist G-1 disrupts tubulin dynamics and potentiates temozolomide to impair glioblastoma cell proliferation A Hirtz, N Lebourdais, F Rech, Y Bailly, A Vaginay, M Smaïl-Tabbone, ... Cells 10 (12), 3438, 2021 | 9 | 2021 |
| An experimental evaluation of similarity-based and embedding-based link prediction methods on graphs MK Islam, S Aridhi, M Smail-Tabbone International Journal of Data Mining & Knowledge Management Process 11, 1-18, 2021 | 1 | 2021 |
| From quantitative SBML to boolean networks A Vaginay, T Boukhobza, M Smaïl-Tabbone 19th conference on Computational Methods in Systems Biology, CMSB 2021, 2021 | | 2021 |
| Appraisal study of similarity-based and embedding-based link prediction methods on graphs MK Islam, S Aridhi, M Smail-Tabbone Proceedings of the 10th International Conference on Data Mining & Knowledge …, 2021 | 5 | 2021 |
| New strategy for optimizing knowledge-based docking parameters: application to ssRNA-protein docking A Kravchenko, M Smaïl-Tabbone, IC de Beauchêne, SJ de Vries JOBIM 2021-Journées Ouvertes en Biologie, Informatique et Mathématiques, 2021 | | 2021 |
| PGxCorpus, a manually annotated corpus for pharmacogenomics J Legrand, R Gogdemir, C Bousquet, K Dalleau, MD Devignes, W Digan, ... FUNDAMENTAL & CLINICAL PHARMACOLOGY 35, 195-196, 2021 | | 2021 |
| Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining E Bresso, P Monnin, C Bousquet, FE Calvier, NC Ndiaye, N Petitpain, ... BMC medical informatics and decision making 21 (1), 171, 2021 | 13 | 2021 |
