Follow
Jinwoo Leem
Jinwoo Leem
Senior ML Research Scientist, Isomorphic Labs
Verified email at isomorphiclabs.com
Title
Cited by
Cited by
Year
SAbDab: the structural antibody database
J Dunbar, K Krawczyk, J Leem, T Baker, A Fuchs, G Georges, J Shi, ...
Nucleic acids research 42 (D1), D1140-D1146, 2014
5802014
ABodyBuilder: Automated antibody structure prediction with data–driven accuracy estimation
J Leem, J Dunbar, G Georges, J Shi, CM Deane
MAbs 8 (7), 1259-1268, 2016
2332016
Observed antibody space: a resource for data mining next-generation sequencing of antibody repertoires
A Kovaltsuk, J Leem, S Kelm, J Snowden, CM Deane, K Krawczyk
The Journal of Immunology 201 (8), 2502-2509, 2018
2232018
SAbPred: a structure-based antibody prediction server
J Dunbar, K Krawczyk, J Leem, C Marks, J Nowak, C Regep, G Georges, ...
Nucleic acids research 44 (W1), W474-W478, 2016
2162016
Deciphering the language of antibodies using self-supervised learning
J Leem, LS Mitchell, JHR Farmery, J Barton, JD Galson
Patterns 3 (7), 2022
1272022
STCRDab: the structural T-cell receptor database
J Leem, SHP de Oliveira, K Krawczyk, CM Deane
Nucleic acids research 46 (D1), D406-D412, 2018
1012018
Comparative analysis of the CDR loops of antigen receptors
WK Wong, J Leem, CM Deane
Frontiers in immunology 10, 2454, 2019
762019
Structurally mapping antibody repertoires
K Krawczyk, S Kelm, A Kovaltsuk, JD Galson, D Kelly, J Trück, C Regep, ...
Frontiers in immunology 9, 1698, 2018
472018
SCALOP: sequence-based antibody canonical loop structure annotation
WK Wong, G Georges, F Ros, S Kelm, AP Lewis, B Taddese, J Leem, ...
Bioinformatics 35 (10), 1774-1776, 2019
292019
Antibody side chain conformations are position‐dependent
J Leem, G Georges, J Shi, CM Deane
Proteins: Structure, Function, and Bioinformatics 86 (4), 383-392, 2018
292018
AbDiver: a tool to explore the natural antibody landscape to aid therapeutic design
J Młokosiewicz, P Deszyński, W Wilman, I Jaszczyszyn, R Ganesan, ...
Bioinformatics 38 (9), 2628-2630, 2022
222022
ABodyBuilder: Automated antibody structure prediction with data-driven accuracy estimation. MAbs 8, 1259–1268
J Leem, J Dunbar, G Georges, J Shi, CM Deane
192016
Trapped platelets activated in ischemia initiate ventricular fibrillation
TS Dhanjal, RA Medina, J Leem, JE Clark, R Southworth, MJ Curtis
Circulation: Arrhythmia and Electrophysiology 6 (5), 995-1001, 2013
182013
TCRBuilder: multi-state T-cell receptor structure prediction
WK Wong, C Marks, J Leem, AP Lewis, J Shi, CM Deane
Bioinformatics 36 (11), 3580-3581, 2020
152020
Structural modeling of antibody variable regions using deep learning—progress and perspectives on drug discovery
I Jaszczyszyn, W Bielska, T Gawlowski, P Dudzic, T Satława, J Kończak, ...
Frontiers in Molecular Biosciences 10, 1214424, 2023
122023
Ten simple rules for surviving an interdisciplinary PhD
S Demharter, N Pearce, K Beattie, I Frost, J Leem, A Martin, ...
PLoS Computational Biology 13 (5), e1005512, 2017
122017
Enhancing antibody language models with structural information
J Barton, JD Galson, J Leem
bioRxiv, 2023.12. 12.569610, 2024
92024
High-throughput antibody structure modeling and design using abodybuilder
J Leem, CM Deane
Computational Methods in Protein Evolution, 367-380, 2019
62019
Benchmarking and integrating human B-cell receptor genomic and antibody proteomic profiling
K Lê Quý, M Chernigovskaya, M Stensland, S Singh, J Leem, S Revale, ...
NPJ Systems Biology and Applications 10 (1), 73, 2024
42024
Building representation learning models for antibody comprehension
J Barton, A Gaspariunas, JD Galson, J Leem
Cold Spring Harbor Perspectives in Biology 16 (3), a041462, 2024
22024
The system can't perform the operation now. Try again later.
Articles 1–20