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Jinwoo Leem
Jinwoo Leem
Director of Machine Learning, Alchemab
Verified email at alchemab.com
Title
Cited by
Cited by
Year
SAbDab: the structural antibody database
J Dunbar, K Krawczyk, J Leem, T Baker, A Fuchs, G Georges, J Shi, ...
Nucleic acids research 42 (D1), D1140-D1146, 2014
4512014
ABodyBuilder: Automated antibody structure prediction with data–driven accuracy estimation
J Leem, J Dunbar, G Georges, J Shi, CM Deane
MAbs 8 (7), 1259-1268, 2016
2022016
SAbPred: a structure-based antibody prediction server
J Dunbar, K Krawczyk, J Leem, C Marks, J Nowak, C Regep, G Georges, ...
Nucleic acids research 44 (W1), W474-W478, 2016
1812016
Observed antibody space: a resource for data mining next-generation sequencing of antibody repertoires
A Kovaltsuk, J Leem, S Kelm, J Snowden, CM Deane, K Krawczyk
The Journal of Immunology 201 (8), 2502-2509, 2018
1712018
Deciphering the language of antibodies using self-supervised learning
J Leem, LS Mitchell, JHR Farmery, J Barton, JD Galson
Patterns 3 (7), 2022
752022
STCRDab: the structural T-cell receptor database
J Leem, SHP de Oliveira, K Krawczyk, CM Deane
Nucleic acids research 46 (D1), D406-D412, 2018
712018
Comparative analysis of the CDR loops of antigen receptors
WK Wong, J Leem, CM Deane
Frontiers in immunology 10, 487945, 2019
552019
Structurally mapping antibody repertoires
K Krawczyk, S Kelm, A Kovaltsuk, JD Galson, D Kelly, J Trück, J Leem, ...
Frontiers in immunology 9, 387101, 2018
392018
Antibody side chain conformations are position‐dependent
J Leem, G Georges, J Shi, CM Deane
Proteins: Structure, Function, and Bioinformatics 86 (4), 383-392, 2018
272018
SCALOP: sequence-based antibody canonical loop structure annotation
WK Wong, G Georges, F Ros, S Kelm, AP Lewis, B Taddese, J Leem, ...
Bioinformatics 35 (10), 1774-1776, 2019
252019
Trapped platelets activated in ischemia initiate ventricular fibrillation
TS Dhanjal, RA Medina, J Leem, JE Clark, R Southworth, MJ Curtis
Circulation: Arrhythmia and Electrophysiology 6 (5), 995-1001, 2013
172013
AbDiver: a tool to explore the natural antibody landscape to aid therapeutic design
J Młokosiewicz, P Deszyński, W Wilman, I Jaszczyszyn, R Ganesan, ...
Bioinformatics 38 (9), 2628-2630, 2022
122022
ABodyBuilder: Automated antibody structure prediction with data-driven accuracy estimation. MAbs 8, 1259–1268
J Leem, J Dunbar, G Georges, J Shi, CM Deane
122016
TCRBuilder: multi-state T-cell receptor structure prediction
WK Wong, C Marks, J Leem, AP Lewis, J Shi, CM Deane
Bioinformatics 36 (11), 3580-3581, 2020
112020
Ten simple rules for surviving an interdisciplinary PhD
S Demharter, N Pearce, K Beattie, I Frost, J Leem, A Martin, ...
PLoS Computational Biology 13 (5), e1005512, 2017
112017
High-throughput antibody structure modeling and design using abodybuilder
J Leem, CM Deane
Computational Methods in Protein Evolution, 367-380, 2019
42019
Structural modeling of antibody variable regions using deep learning—progress and perspectives on drug discovery
I Jaszczyszyn, W Bielska, T Gawlowski, P Dudzic, T Satława, J Kończak, ...
Frontiers in Molecular Biosciences 10, 2023
32023
Building Representation Learning Models for Antibody Comprehension
J Barton, A Gaspariunas, JD Galson, J Leem
Cold Spring Harbor Perspectives in Biology 16 (3), a041462, 2024
12024
Benchmarking and integrating human B-cell receptor genomic and antibody proteomic profiling
K Le Quy, M Chernigovskaya, M Stensland, S Singh, J Leem, S Revale, ...
bioRxiv, 2023.11. 01.565093, 2023
12023
Enhancing Antibody Language Models with Structural Information
J Barton, JD Galson, J Leem
bioRxiv, 2023.12. 12.569610, 2024
2024
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Articles 1–20