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Jaqueline Joice Brito
Jaqueline Joice Brito
Postdoctoral scholar at USC
Verified email at usc.edu
Title
Cited by
Cited by
Year
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
1822022
Challenges and recommendations to improve the installability and archival stability of omics computational tools
S Mangul, T Mosqueiro, RJ Abdill, D Duong, K Mitchell, V Sarwal, B Hill, ...
PLoS biology 17 (6), e3000333, 2019
84*2019
Recommendations to enhance rigor and reproducibility in biomedical research
JJ Brito, J Li, JH Moore, CS Greene, NA Nogoy, LX Garmire, S Mangul
GigaScience 9 (6), giaa056, 2020
512020
Physical data warehouse design on NoSQL databases-OLAP query processing over HBase
LC Scabora, JJ Brito, RR Ciferri, CD de Aguiar Ciferri
International Conference on Enterprise Information Systems 2, 111-118, 2016
402016
Benchmarking of computational error-correction methods for next-generation sequencing data
K Mitchell, JJ Brito, I Mandric, Q Wu, S Knyazev, S Chang, LS Martin, ...
Genome biology 21, 1-13, 2020
392020
Faster cloud star joins with reduced disk spill and network communication
JJ Brito, T Mosqueiro, RR Ciferri, CD de Aguiar Ciferri
Procedia Computer Science 80, 74-85, 2016
202016
Efficient processing of drill-across queries over geographic data warehouses
JJ Brito, TLL Siqueira, VC Times, RR Ciferri, CD de Ciferri
Data Warehousing and Knowledge Discovery: 13th International Conference …, 2011
112011
Efficient approximate query answering over sensor data with deterministic error guarantees
J Brito, K Demirkaya, B Etienne, Y Katsis, C Lin, Y Papakonstantinou
arXiv preprint arXiv:1707.01414, 2017
82017
Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing
K Peng, TS Nowicki, K Campbell, M Vahed, D Peng, Y Meng, ...
Briefings in Bioinformatics 24 (4), bbad220, 2023
62023
Corrigendum to: Recommendations to enhance rigor and reproducibility in biomedical research
JJ Brito, J Li, JH Moore, CS Greene, NA Nogoy, LX Garmire, S Mangul
Gigascience 9 (9), giaa103, 2020
52020
pyTCR: A comprehensive and scalable solution for TCR-Seq data analysis to facilitate reproducibility and rigor of immunogenomics research
K Peng, J Moore, M Vahed, J Brito, G Kao, AM Burkhardt, H Alachkar, ...
Frontiers in Immunology 13, 954078, 2022
32022
Plato: Approximate analytics over compressed time series with tight deterministic error guarantees
E Boursier, JJ Brito, C Lin, Y Papakonstantinou
CoRR, abs/1808.04876, 2018
32018
Seeing beyond the target: leveraging off-target reads in targeted clinical tumor sequencing to identify prognostic biomarkers
S Mangul, JJ Brito, S Groha, N Zaitlen, A Gusev
bioRxiv, 2021.05. 28.446240, 2021
22021
Random access with a distributed bitmap join index for star joins
JJ Brito, T Mosqueiro, RR Ciferri, CDA Ciferri
Heliyon 6 (2), 2020
22020
Telescope: an interactive tool for managing large-scale analysis from mobile devices
JJ Brito, T Mosqueiro, J Rotman, V Xue, DJ Chapski, JD la Hoz, P Matias, ...
GigaScience 9 (1), giz163, 2020
12020
Processamento de consultas SOLAP drill-across e com junção espacial em data warehouses geográficos
JJ Brito
Universidade de São Paulo, 2012
12012
The DNA methylation landscape across the TCR loci genes in patients with acute myeloid leukemia
M Pospiech, J Beckford, AM Kumar, M Tamizharasan, J Brito, G Liang, ...
Cancer Research 84 (6_Supplement), 7011-7011, 2024
2024
TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles
V Sarwal, J Brito, S Mangul, D Koslicki
GigaScience 12, giad008, 2023
2023
Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities
M Alser, S Waymost, R Ayyala, B Lawlor, RJ Abdill, N Rajkumar, ...
arXiv preprint arXiv:2203.16261, 2022
2022
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Articles 1–19