Ignacio Arganda-Carreras

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Johannes SchindelinVerified email at wisc.edu
Tobias PietzschCSBD/MPI-CBGVerified email at mpi-cbg.de
Albert CardonaMRC LMB and University of CambridgeVerified email at mrc-lmb.cam.ac.uk
Stephan PreibischHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Curtis RuedenUniversity of Wisconsin-MadisonVerified email at wisc.edu
Mark Longair(Previously) Postdoctoral researcher, Institute of Neuroinformatics, Uni / ETH ZürichVerified email at longair.net
Stephan SaalfeldHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Pavel TomancakResearch Group Leader at the Max Planck Institute of Molecular Cell Biology and Genetics in DresdenVerified email at mpi-cbg.de
Benjamin SchmidOptical Imaging Centre ErlangenVerified email at fau.de
Kevin EliceiriRRF Walter H. Helmerich Professor Medical Physics, Biomedical Engineering, UW-MadisonVerified email at wisc.edu
Jean-Yves TinevezResearch engineer, Institut Pasteur, Paris, FranceVerified email at pasteur.fr
Daniel James Whitemetrology engineer at infineonVerified email at infineon.com
Fadi DornaikaIKERBASQUE Research Foundation - Ho Chi Minh City Open UniversityVerified email at ehu.eus
H Sebastian SeungProfessor, Princeton Neuroscience Institute and Computer Science Dept.Verified email at princeton.edu
Philippe AndreyResearch Director (DR2), Institut National de la Recherche Agronomique (INRA)Verified email at inrae.fr
Carlos Ortiz de SolorzanoFull Professor - CIMA - Universidad de NavarraVerified email at unav.es
Arrate Muñoz BarrutiaProfessor, Univ. Carlos III de Madrid; Instituto de Investigación Sanitaria Gregorio MarañónVerified email at ing.uc3m.es
David LeglandINRAEVerified email at inrae.fr
Gorka AzkuneAssociate Professor at University of the Basque Country (UPV/EHU)Verified email at ehu.eus
Carlos Oscar S. Sorzano (ORCID:000...National Center of Biotechnology (CSIC)Verified email at cnb.csic.es

Ignacio Arganda-Carreras

Ikerbasque Associate Researcher at University of the Basque Country and DIPC

Verified email at ehu.eus - Homepage

Machine Learning Image Processing Computer Vision Bioimage Analysis Neuroscience


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Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nature Methods 9 (7), 676–682, 2012	50093	2012
BoneJ: free and extensible bone image analysis in ImageJ M Doube, MM Kłosowski, I Arganda-Carreras, FP Cordelières, ... Bone 47 (6), 1076-1079, 2010	2043	2010
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ... Bioinformatics 33 (15), 2424-2426, 2017	1751	2017
MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ D Legland, I Arganda-Carreras, P Andrey Bioinformatics 32 (22), 3532-3534, 2016	972	2016
TrakEM2 software for neural circuit reconstruction A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ... PloS one 7 (6), e38011, 2012	909	2012
Serial two-photon tomography for automated ex vivo mouse brain imaging T Ragan, LR Kadiri, KU Venkataraju, K Bahlmann, J Sutin, J Taranda, ... Nature methods 9 (3), 255-258, 2012	637	2012
3D reconstruction of histological sections: Application to mammary gland tissue I Arganda‐Carreras, R Fernández‐González, A Muñoz‐Barrutia, ... Microscopy research and technique 73 (11), 1019-1029, 2010	613	2010
Consistent and elastic registration of histological sections using vector-spline regularization I Arganda-Carreras, COS Sorzano, R Marabini, JM Carazo, ... Computer Vision Approaches to Medical Image Analysis: Second International …, 2006	397	2006
Crowdsourcing the creation of image segmentation algorithms for connectomics I Arganda-Carreras, SC Turaga, DR Berger, D Cireşan, A Giusti, ... Frontiers in neuroanatomy 9, 142, 2015	346	2015
Mapping social behavior-induced brain activation at cellular resolution in the mouse Y Kim, KU Venkataraju, K Pradhan, C Mende, J Taranda, SC Turaga, ... Cell reports 10 (2), 292-305, 2015	283	2015
Vision-Based Fall Detection with Convolutional Neural Networks A Núñez-Marcos, G Azkune, I Arganda-Carreras Wireless Communications and Mobile Computing 2017, 1-16, 2017	246	2017
Deep learning on chest X-ray images to detect and evaluate pneumonia cases at the era of COVID-19 K Hammoudi, H Benhabiles, M Melkemi, F Dornaika, I Arganda-Carreras, ... Journal of medical systems 45 (7), 75, 2021	174	2021
ANHIR: automatic non-rigid histological image registration challenge J Borovec, J Kybic, I Arganda-Carreras, DV Sorokin, G Bueno, ... IEEE transactions on medical imaging 39 (10), 3042-3052, 2020	96	2020
Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy L Abdeladim, KS Matho, S Clavreul, P Mahou, JM Sintes, X Solinas, ... Nature communications 10 (1), 1662, 2019	85	2019
MitoEM dataset: Large-scale 3D mitochondria instance segmentation from EM images D Wei, Z Lin, D Franco-Barranco, N Wendt, X Liu, W Yin, X Huang, ... International Conference on Medical Image Computing and Computer-Assisted …, 2020	74	2020
Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling N Miyasaka, I Arganda-Carreras, N Wakisaka, M Masuda, U Sümbül, ... Nature communications 5 (1), 3639, 2014	72	2014
An optimized approach to perform bone histomorphometry D Malhan, M Muelke, S Rosch, AB Schaefer, F Merboth, D Weisweiler, ... Frontiers in endocrinology 9, 404664, 2018	67	2018
Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts A Cardona, S Saalfeld, I Arganda-Carreras, W Pereanu, J Schindelin, ... The Journal of Neuroscience 30 (22), 7538-7553, 2010	66	2010
Avoiding a replication crisis in deep-learning-based bioimage analysis RF Laine, I Arganda-Carreras, R Henriques, G Jacquemet Nature methods 18 (10), 1136-1144, 2021	60	2021
NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei A Poulet, I Arganda-Carreras, D Legland, AV Probst, P Andrey, C Tatout Bioinformatics 31 (7), 1144-1146, 2015	56	2015

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