Tinyi Chu
Tinyi Chu
Memorial Sloan Kettering Cancer Center
Verified email at cornell.edu
Title
Cited by
Cited by
Year
Transcriptional response to stress is pre-wired by promoter and enhancer architecture
A Vihervaara, DB Mahat, MJ Guertin, T Chu, CG Danko, JT Lis, L Sistonen
Nature communications 8 (1), 1-16, 2017
872017
Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme
T Chu, EJ Rice, GT Booth, HH Salamanca, Z Wang, LJ Core, SL Longo, ...
Nature genetics 50 (11), 1553-1564, 2018
632018
Dynamic evolution of regulatory element ensembles in primate CD4+ T cells
CG Danko, LA Choate, BA Marks, EJ Rice, Z Wang, T Chu, AL Martins, ...
Nature ecology & evolution 2 (3), 537-548, 2018
432018
Identification of regulatory elements from nascent transcription using dREG
Z Wang, T Chu, LA Choate, CG Danko
Genome research 29 (2), 293-303, 2019
362019
Discovering Transcriptional Regulatory Elements From Run‐On and Sequencing Data Using the Web‐Based dREG Gateway
T Chu, Z Wang, SP Chou, CG Danko
Current protocols in bioinformatics 66 (1), e70, 2019
122019
The ribosomal maturation factor P from Mycobacterium smegmatis facilitates the ribosomal biogenesis by binding to the small ribosomal protein S12
T Chu, X Weng, COK Law, HK Kong, J Lau, S Li, HQ Pham, R Wang, ...
Journal of Biological Chemistry 294 (1), 372-378, 2019
82019
Physical confinement induces malignant transformation in mammary epithelial cells
YC Lu, T Chu, MS Hall, DJ Fu, Q Shi, A Chiu, D An, LH Wang, Y Pardo, ...
Biomaterials 217, 119307, 2019
72019
Rgtsvm: support vector machines on a GPU in R
Z Wang, T Chu, LA Choate, CG Danko
arXiv preprint arXiv:1706.05544, 2017
72017
Accurate imputation of histone modifications using transcription
Z Wang, AG Chivu, LA Choate, EJ Rice, DC Miller, T Chu, SP Chou, ...
biorxiv, 2020
62020
A bi-stable feedback loop between GDNF, EGR1, and ERα contribute to endocrine resistant breast cancer
S Horibata, EJ Rice, H Zheng, C Mukai, T Chu, BA Marks, SA Coonrod, ...
PloS one 13 (4), e0194522, 2018
42018
Bayesian inference of cell composition and gene expression reveals tumor-microenvironment interactions
T Chu, CG Danko
BioRxiv, 2020
32020
Building a science gateway for processing and modeling sequencing data via Apache Airavata
Z Wang, MA Christie, E Abeysinghe, T Chu, S Marru, M Pierce, CG Danko
Proceedings of the Practice and Experience on Advanced Research Computing, 1-7, 2018
22018
Funmap2: an R package for QTL mapping using longitudinal phenotypes
N Wang, T Chu, J Luo, R Wu, Z Wang
PeerJ 7, e7008, 2019
12019
Interdependence between histone marks and steps in Pol II transcription
C Danko, Z Wang, A Chivu, L Choate, E Rice, D Miller, T Chu, SP Chou, ...
2021
COMP-14. MOLECULAR PROFILING AND CELLULAR DECONVOLUTION OF GLIOBLASTOMA BRAIN TUMORS USING CHROMATIN RUN-ON AND SEQUENCING
T Chu, E Rice, H Salamanca, Z Wang, S Longo, R Corona, M Viapiano, ...
Neuro-Oncology 21 (Suppl 6), vi64, 2019
2019
COMP-11. CHROMATIN RUN-ON AND SEQUENCING (ChRO-seq) PROVIDES RETROSPECTIVE MOLECULAR PROFILING AND TRANSCRIPTIONAL ACTIVITY OF BRAIN TUMOR SPECIMENS UNSUITABLE FOR CONVENTIONAL …
T Chu, E Rice, H Salamanca, Z Wang, S Longo, J Sweeney, B Verhave, ...
Neuro-Oncology 20 (suppl_6), vi65-vi66, 2018
2018
Unique nascent RNA sequences that distinguish normal brain and malignant gliomas
LS Chin, T Chu, E Rice, G Booth, H Salamanca, Z Wang, L Core, S Longo, ...
JOURNAL OF NEUROSURGERY 128 (4), 59-59, 2018
2018
RET Ligands Mediate Endocrine Sensitivity via a Bi-stable Feedback Loop with ERα
S Horibata, EJ Rice, H Zheng, LJ Anguish, C Mukai, BA Marks, T Chu, ...
bioRxiv, 098848, 2017
2017
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Articles 1–18