James Southern
James Southern
SGI
Verified email at sgi.com
TitleCited byYear
Chaste: an open source C++ library for computational physiology and biology
GR Mirams, CJ Arthurs, MO Bernabeu, R Bordas, J Cooper, A Corrias, ...
PLoS computational biology 9 (3), e1002970, 2013
2862013
Multi-scale computational modelling in biology and physiology
J Southern, J Pitt-Francis, J Whiteley, D Stokeley, H Kobashi, R Nobes, ...
Progress in biophysics and molecular biology 96 (1-3), 60-89, 2008
1622008
Simulation of cardiac electrophysiology on next-generation high-performance computers
R Bordas, B Carpentieri, G Fotia, F Maggio, R Nobes, J Pitt-Francis, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2009
502009
Chaste: incorporating a novel multi-scale spatial and temporal algorithm into a large-scale open source library
MO Bernabeu, R Bordas, P Pathmanathan, J Pitt-Francis, J Cooper, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2009
382009
The significant effect of the choice of ionic current integration method in cardiac electro‐physiological simulations
P Pathmanathan, GR Mirams, J Southern, JP Whiteley
International Journal for Numerical Methods in Biomedical Engineering 27 (11 …, 2011
362011
High voltage charge pump circuit
T Gilliland
US Patent 6,661,278, 2003
362003
Parallel anisotropic mesh adaptivity with dynamic load balancing for cardiac electrophysiology
J Southern, GJ Gorman, MD Piggott, PE Farrell
Journal of Computational Science 3 (1-2), 8-16, 2012
342012
Application level fault recovery: Using fault-tolerant open MPI in a PDE solver
MM Ali, J Southern, P Strazdins, B Harding
2014 IEEE International Parallel & Distributed Processing Symposium …, 2014
312014
Hybrid OpenMP/MPI anisotropic mesh smoothing
GJ Gorman, J Southern, PE Farrell, MD Piggott, G Rokos, PHJ Kelly
Procedia Computer Science 9, 1513-1522, 2012
272012
Solving the coupled system improves computational efficiency of the bidomain equations
JA Southern, G Plank, EJ Vigmond, JP Whiteley
IEEE Transactions on Biomedical Engineering 56 (10), 2404-2412, 2009
262009
Simulating cardiac electrophysiology using anisotropic mesh adaptivity
J Southern, GJ Gorman, MD Piggott, PE Farrell, MO Bernabeu, ...
Journal of computational science 1 (2), 82-88, 2010
232010
Fault-tolerant grid-based solvers: Combining concepts from sparse grids and mapreduce
JW Larson, M Hegland, B Harding, S Roberts, L Stals, AP Rendell, ...
Procedia Computer Science 18, 130-139, 2013
222013
Modeling cardiac defibrillation
NA Trayanova, G Plank
Inst. für Math. und Wiss. Rechnen, 2008
192008
cisExpress: motif detection in DNA sequences
M Triska, D Grocutt, J Southern, DJ Murphy, T Tatarinova
Bioinformatics 29 (17), 2203-2205, 2013
182013
Achieving efficient strong scaling with PETSc using hybrid MPI/OpenMP optimisation
M Lange, G Gorman, M Weiland, L Mitchell, J Southern
International Supercomputing Conference, 97-108, 2013
182013
Optimization of flow diverters for cerebral aneurysms
H Anzai, M Ohta, JL Falcone, B Chopard
Journal of Computational Science 3 (1-2), 1-7, 2012
182012
Fault tolerant computation with the sparse grid combination technique
B Harding, M Hegland, J Larson, J Southern
SIAM Journal on Scientific Computing 37 (3), C331-C353, 2015
172015
Process migration method, computer system and computer program
JA Southern, P Chow
US Patent App. 10/235,213, 2019
82019
Thread-parallel anisotropic mesh adaptation
GJ Gorman, G Rokos, J Southern, PHJ Kelly
New Challenges in Grid Generation and Adaptivity for Scientific Computing …, 2015
82015
Chaste: a case study of parallelisation of an open source finite-element solver with applications to computational cardiac electrophysiology simulation
MO Bernabeu, J Southern, N Wilson, P Strazdins, J Cooper, J Pitt-Francis
The International Journal of High Performance Computing Applications 28 (1 …, 2014
82014
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