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Tomás Gomes
Tomás Gomes
iMM Lisboa
Verified email at medicina.ulisboa.pt
Title
Cited by
Cited by
Year
A cellular census of human lungs identifies novel cell states in health and in asthma
FA Vieira Braga, G Kar, M Berg, OA Carpaij, K Polanski, LM Simon, ...
Nature medicine 25 (7), 1153-1163, 2019
7252019
EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
ATL Lun, S Riesenfeld, T Andrews, TP Dao, T Gomes, ...
Genome biology 20, 1-9, 2019
663*2019
Mammalian NET-seq reveals genome-wide nascent transcription coupled to RNA processing
T Nojima, T Gomes, ARF Grosso, H Kimura, MJ Dye, S Dhir, ...
Cell 161 (3), 526-540, 2015
5432015
Single-cell transcriptomics of regulatory T cells reveals trajectories of tissue adaptation
RJ Miragaia, T Gomes, A Chomka, L Jardine, A Riedel, AN Hegazy, ...
Immunity 50 (2), 493-504. e7, 2019
4222019
Cross-tissue immune cell analysis reveals tissue-specific features in humans
C Domínguez Conde, C Xu, LB Jarvis, DB Rainbow, SB Wells, T Gomes, ...
Science 376 (6594), eabl5197, 2022
3332022
Distinctive patterns of transcription and RNA processing for human lincRNAs
M Schlackow, T Nojima, T Gomes, A Dhir, M Carmo-Fonseca, ...
Molecular cell 65 (1), 25-38, 2017
2582017
Distinct microbial and immune niches of the human colon
KR James, T Gomes, R Elmentaite, N Kumar, EL Gulliver, HW King, ...
Nature Immunology 21 (3), 343-353, 2020
2102020
Gene expression variability across cells and species shapes innate immunity
T Hagai, X Chen, RJ Miragaia, R Rostom, T Gomes, N Kunowska, ...
Nature 563 (7730), 197-202, 2018
2002018
Single-cell sequencing of developing human gut reveals transcriptional links to childhood Crohn’s disease
R Elmentaite, ADB Ross, K Roberts, KR James, D Ortmann, T Gomes, ...
Developmental cell 55 (6), 771-783. e5, 2020
1802020
Genome-wide CRISPR Screens in T Helper Cells Reveal Pervasive Crosstalk between Activation and Differentiation
J Henriksson, X Chen, T Gomes, U Ullah, KB Meyer, R Miragaia, G Duddy, ...
Cell, 2019
1612019
RNA polymerase II phosphorylated on CTD serine 5 interacts with the spliceosome during co-transcriptional splicing
T Nojima, K Rebelo, T Gomes, AR Grosso, NJ Proudfoot, ...
Molecular cell 72 (2), 369-379. e4, 2018
1482018
Mammalian NET-seq analysis defines nascent RNA profiles and associated RNA processing genome-wide
T Nojima, T Gomes, M Carmo-Fonseca, NJ Proudfoot
Nature protocols 11 (3), 413-428, 2016
1022016
Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation
J Pramanik, X Chen, G Kar, J Henriksson, T Gomes, JE Park, K Natarajan, ...
Genome medicine 10, 1-19, 2018
772018
Immunology driven by large-scale single-cell sequencing
T Gomes, SA Teichmann, C Talavera-López
Trends in immunology 40 (11), 1011-1021, 2019
692019
Tumor necrosis factor receptor family costimulation increases regulatory T‐cell activation and function via NF‐κB
M Lubrano di Ricco, E Ronin, D Collares, J Divoux, S Grégoire, H Wajant, ...
European journal of immunology 50 (7), 972-985, 2020
682020
Single-cell analyses of axolotl telencephalon organization, neurogenesis, and regeneration
K Lust, A Maynard, T Gomes, JS Fleck, JG Camp, EM Tanaka, B Treutlein
Science 377 (6610), eabp9262, 2022
47*2022
Single-cell RNA-sequencing resolves self-antigen expression during mTEC development
RJ Miragaia, X Zhang, T Gomes, V Svensson, T Ilicic, J Henriksson, G Kar, ...
Scientific reports 8 (1), 685, 2018
472018
Re-evaluation of human BDCA-2+ DC during acute sterile skin inflammation
YL Chen, T Gomes, CS Hardman, FA Vieira Braga, D Gutowska-Owsiak, ...
Journal of Experimental Medicine 217 (3), e20190811, 2019
382019
Immune cell dynamics unfolded by single-cell technologies
DJ Kunz, T Gomes, KR James
Frontiers in immunology 9, 379523, 2018
382018
Developmental bifurcation of human T follicular regulatory cells
S Kumar, VR Fonseca, F Ribeiro, AP Basto, A Água-Doce, M Monteiro, ...
Science Immunology 6 (59), eabd8411, 2021
222021
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