Dimos Goundaroulis

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Andrzej StasiakUniversity of Lausanne, SwitzerlandVerified email at unil.ch
Julien DorierUniversity of LausanneVerified email at unil.ch
Sofia LambropoulouProfessor of Mathematics, National Technical University of AthensVerified email at math.ntua.gr
Fabrizio BenedettiCHUVVerified email at chuv.ch
Pawel Dabrowski-TumanskiCardinal Stefan Wyszynski UniversityVerified email at uksw.edu.pl
Joanna SułkowskaWarsaw University, Centre of New TechnologiesVerified email at cent.uw.edu.pl
Eric RawdonUniversity of St. ThomasVerified email at stthomas.edu
Aristides KontogeorgisNational and Kapodistrian University of Athens, Department of MathematicsVerified email at math.uoa.gr
Kenneth C MillettProfessor of Mathematics, University of California, Santa BarbaraVerified email at math.ucsb.edu
Piotr SułkowskiFaculty of Physics, University of Warsaw & California Institute of TechnologyVerified email at fuw.edu.pl
Paweł RubachWarsaw School of EconomicsVerified email at sgh.waw.pl
Neslihan GügümcüAssistant Professor, Izmir Institute of TechnologyVerified email at iyte.edu.tr
Dusan RackoPolymer Institute, Slovak Academy of SciencesVerified email at unil.ch
Agnese BarbensiUniversity of QueenslandVerified email at uq.edu.au
Erez Lieberman AidenBaylor College of Medicine, Rice UniversityVerified email at math.harvard.edu
Sotirios Zarogiannis, PhD, MPHAssociate Professor of Physiology, Faculty of Medicine, University of ThessalyVerified email at med.uth.gr
K GOURGOULIANISrespiratory medicine dept, University of ThessalyVerified email at med.uth.gr
Erasmia RoukaFaculty of Nursing, University of ThessalyVerified email at med.uth.gr
Oliver VipondUniversity of OxfordVerified email at maths.ox.ac.uk
Barbara I. MahlerUniversity of OxfordVerified email at maths.ox.ac.uk

Dimos Goundaroulis

Other namesDimos Gkountaroulis, Dimoklis Gkountaroulis

Lecturer, Baylor College of Medicine

Verified email at bcm.edu

Computational Biology Genomics Deep Learning Applied Knot Theory Topology


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KnotProt 2.0: a database of proteins with knots and other entangled structures P Dabrowski-Tumanski, P Rubach, D Goundaroulis, J Dorier, P Sułkowski, ... Nucleic acids research 47 (D1), D367-D375, 2018	90	2018
Topological models for open-knotted protein chains using the concepts of knotoids and bonded knotoids D Goundaroulis, N Gügümcü, S Lambropoulou, J Dorier, A Stasiak, ... Polymers 9 (9), 444, 2017	68	2017
Studies of global and local entanglements of individual protein chains using the concept of knotoids D Goundaroulis, J Dorier, F Benedetti, A Stasiak Scientific Reports 7 (1), 6309, 2017	67	2017
Knoto-ID: a tool to study the entanglement of open protein chains using the concept of knotoids J Dorier, D Goundaroulis, F Benedetti, A Stasiak Bioinformatics 34 (19), 3402-3404, 2018	40	2018
Chromatin loop extrusion and chromatin unknotting D Racko, F Benedetti, D Goundaroulis, A Stasiak Polymers 10 (10), 1126, 2018	37	2018
Chromatin is frequently unknotted at the megabase scale D Goundaroulis, EL Aiden, A Stasiak Biophysical journal 118 (9), 2268-2279, 2020	29	2020
Chromatin alternates between A and B compartments at kilobase scale for subgenic organization HL Harris, H Gu, M Olshansky, A Wang, I Farabella, Y Eliaz, A Kalluchi, ... Nature communications 14 (1), 3303, 2023	27	2023
Framization of the Temperley-Lieb algebra D Goundaroulis, J Juyumaya, A Kontogeorgis, S Lambropoulou Math. Res. Letters 24 (7), 299 - 345, 2017	24*	2017
The ENCODE uniform analysis pipelines BC Hitz, JW Lee, O Jolanki, MS Kagda, K Graham, P Sud, I Gabdank, ... Research Square, 2023	23	2023
The Yokonuma-Temperley-Lieb Algebra D Goundaroulis, J Juyumaya, A Kontogeorgis, S Lambropoulou Banach Center Publications 103, 77-99, 2014	22*	2014
A systematic classification of knotoids on the plane and on the sphere D Goundaroulis, J Dorier, A Stasiak arXiv preprint arXiv:1902.07277, 2019	18	2019
-curves in proteins P Dabrowski-Tumanski, D Goundaroulis, A Stasiak, JI Sulkowska arXiv preprint arXiv:1908.05919, 2019	15	2019
A new two-variable generalization of the Jones polynomial D Goundaroulis, S Lambropoulou Journal of Knot Theory and Its Ramifications 28 (11), 1940005, 2019	10	2019
In silico transcriptomic analysis of wound-healing-associated genes in malignant pleural mesothelioma E Rouka, E Beltsios, D Goundaroulis, GD Vavougios, EI Solenov, ... Medicina 55 (6), 267, 2019	9	2019
f -distance of knotoids and protein structure A Barbensi, D Goundaroulis Proceedings of the Royal Society A 477 (2246), 20200898, 2021	8	2021
Classical link invariants from the framizations of the Iwahori-Hecke algebra and the Temperley-Lieb algebra of type D Goundaroulis, S Lambropoulou J. Knot Theory Ramif. 26 (9), 1743005, 2017	7	2017
A topological selection of folding pathways from native states of knotted proteins A Barbensi, N Yerolemou, O Vipond, BI Mahler, P Dabrowski-Tumanski, ... Symmetry 13 (9), 1670, 2021	5	2021
Knotoids and protein structure D Goundaroulis, J Dorier, A Stasiak Topol. Geom. Biopolym 746, 185, 2020	5	2020
Open knots J Dorier, D Goundaroulis, EJ Rawdon, A Stasiak Encyclopedia of knot theory, 859-876, 2021	3	2021
Framization of a Temperley-Lieb algebra of type B M Flores, D Goundaroulis Journal of Pure and Applied Algebra 224 (6), 106273, 2020	3	2020

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