Jason Cole
Jason Cole
Deputy Director, CCDC
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Cited by
Cited by
New software for searching the Cambridge Structural Database and visualizing crystal structures
IJ Bruno, JC Cole, PR Edgington, M Kessler, CF Macrae, P McCabe, ...
Acta Crystallographica Section B: Structural Science 58 (3), 389-397, 2002
Improved protein–ligand docking using GOLD
ML Verdonk, JC Cole, MJ Hartshorn, CW Murray, RD Taylor
Proteins: Structure, Function, and Bioinformatics 52 (4), 609-623, 2003
Retrieval of crystallographically-derived molecular geometry information
IJ Bruno, JC Cole, M Kessler, J Luo, WDS Motherwell, LH Purkis, ...
Journal of chemical information and computer sciences 44 (6), 2133-2144, 2004
DASH: a program for crystal structure determination from powder diffraction data
WIF David, K Shankland, J Van De Streek, E Pidcock, WDS Motherwell, ...
Journal of Applied Crystallography 39 (6), 910-915, 2006
Report on the sixth blind test of organic crystal structure prediction methods
AM Reilly, RI Cooper, CS Adjiman, S Bhattacharya, AD Boese, ...
Acta Crystallographica Section B: Structural Science, Crystal Engineering …, 2016
A new test set for validating predictions of protein–ligand interaction
JWM Nissink, C Murray, M Hartshorn, ML Verdonk, JC Cole, R Taylor
Proteins: structure, function, and bioinformatics 49 (4), 457-471, 2002
Modeling water molecules in protein− ligand docking using GOLD
ML Verdonk, G Chessari, JC Cole, MJ Hartshorn, CW Murray, ...
Journal of medicinal chemistry 48 (20), 6504-6515, 2005
Comparing protein–ligand docking programs is difficult
JC Cole, CW Murray, JWM Nissink, RD Taylor, R Taylor
Proteins: Structure, Function, and Bioinformatics 60 (3), 325-332, 2005
IsoStar: a library of information about nonbonded interactions
IJ Bruno, JC Cole, JPM Lommerse, RS Rowland, R Taylor, ML Verdonk
Journal of computer-aided molecular design 11, 525-537, 1997
SuperStar: a knowledge-based approach for identifying interaction sites in proteins
ML Verdonk, JC Cole, R Taylor
Journal of molecular biology 289 (4), 1093-1108, 1999
Use of molecular docking computational tools in drug discovery
F Stanzione, I Giangreco, JC Cole
Progress in Medicinal Chemistry 60, 273-343, 2021
Pose prediction and virtual screening performance of GOLD scoring functions in a standardized test
JW Liebeschuetz, JC Cole, O Korb
Journal of computer-aided molecular design 26, 737-748, 2012
Potential and limitations of ensemble docking
O Korb, TSG Olsson, SJ Bowden, RJ Hall, ML Verdonk, JW Liebeschuetz, ...
Journal of chemical information and modeling 52 (5), 1262-1274, 2012
SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids
J Jansen, KC Reimer, JS Nagai, FS Varghese, GJ Overheul, M de Beer, ...
Cell Stem Cell 29 (2), 217-231. e8, 2022
WebCSD: the online portal to the Cambridge Structural Database
IR Thomas, IJ Bruno, JC Cole, CF Macrae, E Pidcock, PA Wood
Journal of applied crystallography 43 (2), 362-366, 2010
Impact of resolving the diurnal cycle in an ocean–atmosphere GCM. Part 2: A diurnally coupled CGCM
DJ Bernie, E Guilyardi, G Madec, JM Slingo, SJ Woolnough, J Cole
Climate dynamics 31, 909-925, 2008
Tropical and subtropical cloud transitions in weather and climate prediction models: The GCSS/WGNE Pacific Cross-Section Intercomparison (GPCI)
J Teixeira, S Cardoso, M Bonazzola, J Cole, A DelGenio, C DeMott, ...
Journal of Climate 24 (20), 5223-5256, 2011
SuperStar: improved knowledge-based interaction fields for protein binding sites
ML Verdonk, JC Cole, P Watson, V Gillet, P Willett
Journal of molecular biology 307 (3), 841-859, 2001
Evaluation of molecular crystal structures using Full Interaction Maps
PA Wood, TSG Olsson, JC Cole, SJ Cottrell, N Feeder, PTA Galek, ...
CrystEngComm 15 (1), 65-72, 2013
Protein-ligand docking and virtual screening with GOLD
JC Cole, JWM Nissink, R Taylor
Virtual screening in drug discovery 1, 379-415, 2005
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