Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination BJW Dekkers, S Pearce, RP van Bolderen-Veldkamp, A Marshall, ... Plant physiology 163 (1), 205-215, 2013 | 205 | 2013 |
A genome-scale metabolic model of Cupriavidus necator H16 integrated with TraDIS and transcriptomic data reveals metabolic insights for biotechnological … N Pearcy, M Garavaglia, T Millat, JP Gilbert, Y Song, H Hartman, C Woods, ... PLoS Computational Biology 18 (5), e1010106, 2022 | 14 | 2022 |
Exploring real-world evidence to uncover unknown drug benefits and support the discovery of new treatment targets for depressive and bipolar disorders RE Teneralli, DM Kern, MS Cepeda, JP Gilbert, WC Drevets Journal of Affective Disorders 290, 324-333, 2021 | 9 | 2021 |
Reproducible variability: assessing investigator discordance across 9 research teams attempting to reproduce the same observational study A Ostropolets, Y Albogami, M Conover, JM Banda, WA Baumgartner Jr, ... Journal of the American Medical Informatics Association 30 (5), 859-868, 2023 | 7 | 2023 |
Gsmodutils: A python based framework for test-driven genome scale metabolic model development. JP Gilbert, N Pearcy, R Norman, T Millat, K Winzer, J King, C Hodgman, ... Bioinformatics, 2019 | 4 | 2019 |
A probabilistic model for the evaluation of module extraction algorithms in complex biological networks JP Gilbert University of Nottingham, 2015 | 2 | 2015 |
Revealing Unknown Benefits of Existing Medications to Aid the Discovery of New Treatments for Post‐Traumatic Stress Disorder DM Kern, RE Teneralli, CM Flores, GM Wittenberg, JP Gilbert, ... Psychiatric Research and Clinical Practice 4 (1), 12-20, 2022 | 1 | 2022 |
From clusters to queries: exploiting uncertainty in the modularity landscape of complex networks JP Gilbert, J Twycross Proceedings of the 14th International Workshop on Mining and Learning with …, 2018 | 1 | 2018 |
Health-Analytics Data to Evidence Suite (HADES): Open-Source Software for Observational Research M Schuemie, R Jenna, A Black, F DeFALCO, L Evans, E Fridgeirsson, ... Studies in health technology and informatics 310, 966, 2024 | | 2024 |
Large-scale empirical identification of candidate comparators for pharmacoepidemiological studies J Bohn, JP Gilbert, C Knoll, DM Kern, PB Ryan medRxiv, 2023.02. 14.23285755, 2023 | | 2023 |
CohortDiagnostics: phenotype evaluation across a network of observational data sources using population-level characterization GA Rao, A Shoaibi, R Makadia, J Hardin, J Swerdel, J Weaver, EA Voss, ... medRxiv, 2023.06. 28.23291982, 2023 | | 2023 |
Potential unknown benefits of rabeprazole: Real-world evidence generated using the reward framework J Bohn, J Gilbert, G Rezvani, SR Ali, Z Yuan, L Hannemann, DM Kern PHARMACOEPIDEMIOLOGY AND DRUG SAFETY 31, 338-338, 2022 | | 2022 |
Evaluation of Negative Control Selection as Method to Control for Systematic Bias in REal-World Assessment of Drug Benefits (REWARD-B) Platform MSC Rachel Teneralli, James P. Gilbert, Christopher A. Knoll, David M. Kern ... https://www.ohdsi.org/2020-global-symposium-showcase-46/, 2020 | | 2020 |
REal World Assessment and Research of Drugs Benefits (REWARD-B): A Technical implementation that aids the identification of unexpected benefits PBR James Gilbert, Rachel E. Teneralli, Christopher A. Knoll, David M. Kern ... https://www.ohdsi.org/2020-global-symposium-showcase-65/, 2020 | | 2020 |
Strategus: Marching towards transparent, reproducible research AG Sena, C Knoll, J Gilbert, J Reps, F DeFalco, C Blacketer, A Molinaro, ... | | |
REal World Assessment and Research of Drugs (REWARD): presenting an open-source package for Population-level effect estimation at the scale of all outcomes by all exposures JP Gilbert, J Bohn, C Knoll, DM Kern | | |
Development of an automated comparator ranking algorithm for the REWARD initiative J Bohn, JP Gilbert, C Knoll, DM Kern | | |
Evaluating automated selection of outcome negative controls for estimating the total error distribution of self-controlled cohort study designs JP Gilbert, RE Teneralli, EA Voss, CA Knoll, DM Kern, M Soledad, ... | | |
CemConnector: A RESTFul application programing interface and client library for the Common Evidence Model (CEM) JP Gilbert, EA Voss, CA Knoll, PB Ryan | | |