Rutger A. Vos

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Arlin StoltzfusNIST, IBBR, UMDVerified email at umd.edu
Barbara GravendeelProfessor at RIBES Radboud University and Naturalis Biodiversity CenterVerified email at naturalis.nl
Hilmar LappDirector of Informatics, Center for Genomic and Computational Biology, Duke UniversityVerified email at duke.edu
Andy PurvisResearch Leader & Merit Researcher, Natural History Museum; Professor of Biodiversity, ImperialVerified email at nhm.ac.uk
Kate Elizabeth JonesProfessor Ecology and Biodiversity, University College LondonVerified email at ucl.ac.uk
Olaf R.P. Bininda-EmondsProfessor of Molecular Systematics, University of OldenburgVerified email at uni-oldenburg.de
Marcel CardilloProfessor, Australian National UniversityVerified email at anu.edu.au
Ross MacPheeCurator of Mammals, American Museum of Natural HistoryVerified email at amnh.org
Tandy WarnowGrainger Distinguished Chair in Engineering, UIUCVerified email at illinois.edu
William H. PielYale-NUS CollegeVerified email at yale-nus.edu.sg
Vincent S.F.T. MerckxScientific Director, Naturalis Biodiversity Center | Associated Professor, University of AmsterdamVerified email at naturalis.nl
Alexandre AntonelliRoyal Botanic Gardens, KewVerified email at kew.org
Robin BeckReader in Biology, University of SalfordVerified email at salford.ac.uk
Richard GrenyerUniversity of OxfordVerified email at ouce.ox.ac.uk
Samantha A. PriceBiological Sciences, Clemson UniversityVerified email at clemson.edu
John GittlemanUniversity of GeorgiaVerified email at uga.edu
Peter MidfordSRI InternationalVerified email at ai.sri.com
Hannes HettlingNaturalis Biodiversity CenterVerified email at naturalis.nl
Enrico PontelliNew Mexico State UniversityVerified email at cs.nmsu.edu
Daniele SilvestroETH ZurichVerified email at bsse.ethz.ch

Rutger A. Vos

Naturalis Biodiversity Center

Verified email at naturalis.nl

evolution / bioinformatics / data science


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The delayed rise of present-day mammals ORP Bininda-Emonds, M Cardillo, KE Jones, RDE MacPhee, RMD Beck, ... Nature 446 (7135), 507-512, 2007	2281	2007
The CIPRES Portals MA Miller, MT Holder, R Vos, PE Midford, T Liebowitz, L Chan, P Hoover, ... http://www. phylo. org/sub_sections/portal., 2009	603*	2009
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system FJ Vonk, NR Casewell, CV Henkel, AM Heimberg, HJ Jansen, ... Proceedings of the National Academy of Sciences 110 (51), 20651-20656, 2013	535	2013
Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole‐genome sequencing 100 Tomato Genome Sequencing Consortium, S Aflitos, E Schijlen, ... The Plant Journal 80 (1), 136-148, 2014	459	2014
Species-level para-and polyphyly in DNA barcode gene trees: strong operational bias in European Lepidoptera M Mutanen, SM Kivelä, RA Vos, C Doorenweerd, S Ratnasingham, ... Systematic biology 65 (6), 1024-1040, 2016	216	2016
Declines in moth populations stress the need for conserving dark nights F van Langevelde, M Braamburg-Annegarn, ME Huigens, R Groendijk, ... Global Change Biology, 2017	141	2017
TreeBASE v. 2: A Database of Phylogenetic Knowledge WH Piel, L Chan, MJ Dominus, J Ruan, RA Vos, V Tannen	135*	2009
Algorithmic single-locus species delimitation: effects of sampling effort, variation and non-monophyly in four methods and 1870 species of beetles M Pentinsaari, R Vos, M Mutanen Molecular Ecology Resources, 2016	122	2016
NeXML: rich, extensible, and verifiable representation of comparative data and metadata RA Vos, JP Balhoff, JA Caravas, MT Holder, H Lapp, WP Maddison, ... Systematic biology 61 (4), 675-689, 2012	115	2012
Accelerated likelihood surface exploration: the likelihood ratchet RA Vos Systematic biology 52 (3), 368-373, 2003	112	2003
Evolutionary dynamics of mycorrhizal symbiosis in land plant diversification FAA Feijen, RA Vos, J Nuytinck, VSFT Merckx Scientific Reports 8 (1), 1-7, 2018	94	2018
Toward a self-updating platform for estimating rates of speciation and migration, ages, and relationships of taxa A Antonelli, H Hettling, FL Condamine, K Vos, RH Nilsson, MJ Sanderson, ... Systematic biology 66 (2), 152-166, 2017	71*	2017
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ... Journal of biomedical semantics 5, 5, 2014	69	2014
Bio::Phylo-phyloinformatic analysis using perl R Vos, J Caravas, K Hartmann, M Jensen, C Miller BMC bioinformatics 12 (1), 63, 2011	61	2011
Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis A Stoltzfus, B O'meara, J Whitacre, R Mounce, EL Gillespie, S Kumar, ... BMC Research Notes 5, 1-15, 2012	58	2012
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ... Journal of biomedical semantics 1, 8, 2010	55	2010
The 2006 NESCent phyloinformatics hackathon: A field report H Lapp, S Bala, JP Balhoff, A Bouck, N Goto, M Holder, R Holland, ... Evolutionary Bioinformatics Online 3, 287, 2007	52	2007
The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants R Hoehndorf, M Alshahrani, GV Gkoutos, G Gosline, Q Groom, T Hamann, ... Journal of biomedical semantics 7, 1-11, 2016	51	2016
Incorporation of an invasive plant into a native insect herbivore food web M Schilthuizen, LPS Pimenta, Y Lammers, PJ Steenbergen, M Flohil, ... PeerJ 4, e1954, 2016	51	2016
The 3rd DBCLS BioHackathon: improving life science data integration with semantic Web technologies T Katayama, MD Wilkinson, G Micklem, S Kawashima, A Yamaguchi, ... Journal of Biomedical Semantics 4 (1), 6, 2013	50	2013

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