Brian Knaus
Brian Knaus
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vcfr: a package to manipulate and visualize variant call format data in R
BJ Knaus, NJ Grünwald
Molecular ecology resources 17 (1), 44-53, 2017
Taxonomic considerations in listing subspecies under the US Endangered Species Act
SM Haig, EA Beever, SM Chambers, HM Draheim, BD Dugger, ...
Conservation Biology 20 (6), 1584-1594, 2006
Targeted enrichment strategies for next‐generation plant biology
R Cronn, BJ Knaus, A Liston, PJ Maughan, M Parks, JV Syring, J Udall
American journal of botany 99 (2), 291-311, 2012
The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster
KE Bushley, R Raja, P Jaiswal, JS Cumbie, M Nonogaki, AE Boyd, ...
PLoS genetics 9 (6), e1003496, 2013
Best practices for population genetic analyses
NJ Grünwald, SE Everhart, BJ Knaus, ZN Kamvar
Phytopathology 107 (9), 1000-1010, 2017
Phytophthora community structure analyses in Oregon nurseries inform systems approaches to disease management
JL Parke, BJ Knaus, VJ Fieland, C Lewis, NJ Grünwald
Phytopathology 104 (10), 1052-1062, 2014
Multiplexed microsatellite recovery using massively parallel sequencing
TN Jennings, BJ Knaus, TD Mullins, SM Haig, RC Cronn
Molecular Ecology Resources 11 (6), 1060-1067, 2011
Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore
BJ Knaus, R Cronn, A Liston, K Pilgrim, MK Schwartz
BMC ecology 11, 1-14, 2011
Genetic applications in avian conservation
SM Haig, WM Bronaugh, RS Crowhurst, J D'elia, CA Eagles-Smith, ...
The Auk 128 (2), 205-229, 2011
A SNP resource for Douglas-fir: de novotranscriptome assembly and SNP detection and validation
GT Howe, J Yu, B Knaus, R Cronn, S Kolpak, P Dolan, WW Lorenz, ...
BMC genomics 14, 1-22, 2013
Loop‐mediated isothermal amplification for detection of the tomato and potato late blight pathogen, Phytophthora infestans
ZR Hansen, BJ Knaus, JF Tabima, CM Press, HS Judelson, NJ Grünwald, ...
Journal of Applied Microbiology 120 (4), 1010-1020, 2016
Dual RNA-seq of the plant pathogen Phytophthora ramorum and its tanoak host
KJ Hayden, M Garbelotto, BJ Knaus, RC Cronn, H Rai, JW Wright
Tree Genetics & Genomes 10, 489-502, 2014
SSR_pipeline: A Bioinformatic Infrastructure for Identifying Microsatellites From Paired-End Illumina High-Throughput DNA Sequencing Data
MP Miller, BJ Knaus, TD Mullins, SM Haig
Journal of Heredity 104 (6), 881-885, 2013
Transcriptome of an A rmillaria root disease pathogen reveals candidate genes involved in host substrate utilization at the host–pathogen interface
AL Ross‐Davis, JE Stewart, JW Hanna, MS Kim, BJ Knaus, R Cronn, ...
Forest Pathology 43 (6), 468-477, 2013
Adegenet: exploratory analysis of genetic and genomic data
T Jombart, ZN Kamvar, C Collins, R Lustrik, MP Beugin, BJ Knaus, ...
Doc. Ophthalmol 107, 13-36, 2018
Identification and distribution of mating‐type idiomorphs in populations of Podosphaera macularis and development of chasmothecia of the fungus
SN Wolfenbarger, MC Twomey, DM Gadoury, BJ Knaus, NJ Grünwald, ...
Plant Pathology 64 (5), 1094-1102, 2015
Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates
G Arsenault-Labrecque, H Sonah, A Lebreton, C Labbé, G Marchand, ...
BMC biology 16, 1-16, 2018
Genome-wide increased copy number is associated with emergence of dominant clones of the Irish potato famine pathogen Phytophthora infestans
BJ Knaus, JF Tabima, SK Shakya, HS Judelson, NJ Grünwald
MBio 11 (3), 10.1128/mbio. 00326-20, 2020
Comparative transcriptomics among four white pine species
EAG Baker, JL Wegrzyn, UU Sezen, T Falk, PE Maloney, DR Vogler, ...
G3: Genes, Genomes, Genetics 8 (5), 1461-1474, 2018
Multilocus analyses reveal little evidence for lineage‐wide adaptive evolution within major clades of soft pines (Pinus subgenus Strobus)
AJ Eckert, AD Bower, KD Jermstad, JL Wegrzyn, BJ Knaus, JV Syring, ...
Molecular Ecology 22 (22), 5635-5650, 2013
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