Isidore Rigoutsos
Isidore Rigoutsos
Richard W. Hevner Professor of Computational Medicine, Director Computational Medicine Center
Verified email at - Homepage
Cited by
Cited by
A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes
KC Miranda, T Huynh, Y Tay, YS Ang, WL Tam, AM Thomson, B Lim, ...
Cell 126 (6), 1203-1217, 2006
The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins
P Dehal, Y Satou, RK Campbell, J Chapman, B Degnan, A De Tomaso, ...
Science 298 (5601), 2157-2167, 2002
MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation
Y Tay, J Zhang, AM Thomson, B Lim, I Rigoutsos
Nature 455 (7216), 1124-1128, 2008
Integrated genomic characterization of pancreatic ductal adenocarcinoma
BJ Raphael, RH Hruban, AJ Aguirre, RA Moffitt, JJ Yeh, C Stewart, ...
Cancer cell 32 (2), 185-203. e13, 2017
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ...
Nature 450 (7169), 560-565, 2007
Dynamic changes in the human methylome during differentiation
L Laurent, E Wong, G Li, T Huynh, A Tsirigos, CT Ong, HM Low, ...
Genome research 20 (3), 320-331, 2010
Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs
Y Tay, L Kats, L Salmena, D Weiss, SM Tan, U Ala, F Karreth, L Poliseno, ...
Cell 147 (2), 344-357, 2011
The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of β-site amyloid precursor protein-cleaving …
WX Wang, BW Rajeev, AJ Stromberg, N Ren, G Tang, Q Huang, ...
Journal of Neuroscience 28 (5), 1213-1223, 2008
The miR-17/92 cluster: a comprehensive update on its genomics, genetics, functions and increasingly important and numerous roles in health and disease
E Mogilyansky, I Rigoutsos
Cell Death & Differentiation 20 (12), 1603-1614, 2013
Geometric hashing: An overview
HJ Wolfson, I Rigoutsos
IEEE computational science and engineering 4 (4), 10-21, 1997
Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm.
I Rigoutsos, A Floratos
Bioinformatics (Oxford, England) 14 (1), 55-67, 1998
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
HG Martin, N Ivanova, V Kunin, F Warnecke, KW Barry, AC McHardy, ...
Nature biotechnology 24 (10), 1263-1269, 2006
Accurate phylogenetic classification of variable-length DNA fragments
AC McHardy, HG Martín, A Tsirigos, P Hugenholtz, I Rigoutsos
Nature methods 4 (1), 63-72, 2007
The amphioxus genome illuminates vertebrate origins and cephalochordate biology
LZ Holland, R Albalat, K Azumi, È Benito-Gutiérrez, MJ Blow, ...
Genome research 18 (7), 1100-1111, 2008
Analysis of 13 cell types reveals evidence for the expression of numerous novel primate-and tissue-specific microRNAs
E Londin, P Loher, AG Telonis, K Quann, P Clark, Y Jing, E Hatzimichael, ...
Proceedings of the National Academy of Sciences 112 (10), E1106-E1115, 2015
An algorithm for point clustering and grid generation
M Berger, I Rigoutsos
IEEE Transactions on Systems, Man, and Cybernetics 21 (5), 1278-1286, 1991
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods
K Mavromatis, N Ivanova, K Barry, H Shapiro, E Goltsman, AC McHardy, ...
Nature methods 4 (6), 495-500, 2007
Metagenomic analysis of phosphorus removing sludgecommunities
H Garcia Martin, N Ivanova, V Kunin, F Warnecke, K Barry, AC McHardy, ...
Nature biotechnology 24 (LBNL-59661), 2006
Genomic analysis of immunity in a Urochordate and the emergence of the vertebrate immune system:“waiting for Godot”
K Azumi, R De Santis, A De Tomaso, I Rigoutsos, F Yoshizaki, MR Pinto, ...
Immunogenetics 55, 570-581, 2003
Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers
S Honda, P Loher, M Shigematsu, JP Palazzo, R Suzuki, I Imoto, ...
Proceedings of the National Academy of Sciences 112 (29), E3816-E3825, 2015
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