Max A. Alekseyev

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Alexander SirotkinNational Research University Higher School of EconomicsVerified email at hse.ru
Dmitry AntipovVisiting fellow, National Institutes of HealthVerified email at nih.gov
Alexey GurevichJun. Prof. of Bioinformatics, HIPS & Saarland UniversityVerified email at helmholtz-hips.de
Andrey PrjibelskiPostdoctoral Researcher @ University of HelsinkiVerified email at helsinki.fi
Sergey NurkPrincipal Bioinformatician, Oxford Nanopore TechnologiesVerified email at nanoporetech.com
Anton BankevichPSUVerified email at psu.edu
Sergey NikolenkoSteklov Institute of Mathematics at St. Petersburg, RussiaVerified email at logic.pdmi.ras.ru
Alexander S. KulikovSteklov Institute of Mathematics at St. PetersburgVerified email at logic.pdmi.ras.ru
Mikhail DvorkinSt. Petersburg Academic UniversityVerified email at rain.ifmo.ru
Nikolay Vyahhi-Verified email at bioinf.spbau.ru
Anton KorobeynikovVerified email at korobeynikov.info
Sergey AganezovGenomic Applications at Oxford Nanopore Technologies, IncVerified email at nanoporetech.com
Jeffrey S. McLeanProfessor University of WashingtonVerified email at uw.edu
Ramunas StepanauskasBigelow Laboratory for Ocean SciencesVerified email at bigelow.org
Pavel AvdeyevPostdoctoral Fellow, UT Southwestern Medical CenterVerified email at UTsouthwestern.edu
Steffen HeberNorth Carolina State UniversityVerified email at ncsu.edu
Haixu TangProfessor, Indiana UniversityVerified email at indiana.edu
Sing-Hoi SzeDepartment of Computer Science and Engineering, Texas A&M UniversityVerified email at cs.tamu.edu
Lev GlebskyUniversidad Autonoma de San LuisPotosi, MexicoVerified email at cactus.iico.uaslp.mx
Nikolai Yu. ZolotykhProf., University of Nizhni Novgorod, RussiaVerified email at itmm.unn.ru

Max A. Alekseyev

George Washington University

Verified email at gwu.edu - Homepage

Bioinformatics Comparative Genomics Graph Theory Combinatorics Number Theory


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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012	23072	2012
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013	1209	2013
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Lecture Notes in Computer Science 7821, 158-170, 2013	827	2013
Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ... Science 347 (6217), 1258522, 2015	612	2015
BayesHammer: Bayesian clustering for error correction in single-cell sequencing SI Nikolenko, AI Korobeynikov, MA Alekseyev BMC Genomics 14 (Suppl 1), S7, 2013	496	2013
Splicing graphs and EST assembly problem S Heber, M Alekseyev, SH Sze, H Tang, PA Pevzner Bioinformatics 18 (Suppl 1), 181-188, 2002	282	2002
Breakpoint graphs and ancestral genome reconstructions M Alekseyev, PA Pevzner Genome research 19 (5), 943-957, 2009	174	2009
Multi-break rearrangements and chromosomal evolution MA Alekseyev, PA Pevzner Theoretical Computer Science 395 (2-3), 193-202, 2008	77	2008
Reconstruction of ancestral genomes in presence of gene gain and loss P Avdeyev, S Jiang, S Aganezov, F Hu, MA Alekseyev Journal of Computational Biology 23 (3), 150-164, 2016	76	2016
Colored de Bruijn graphs and the genome halving problem MA Alekseyev, PA Pevzner IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (1), 98-107, 2007	68	2007
Are there rearrangement hotspots in the human genome? MA Alekseyev, PA Pevzner PLoS Computational Biology 3 (11), e209, 2007	54	2007
On approximation of groups, group actions, and Hopf algebras MA Alekseev, LY Glebskii, EI Gordon Journal of Mathematical Sciences 107, 4305-4332, 2001	42	2001
Multi-break rearrangements and breakpoint re-uses: from circular to linear genomes MA Alekseyev Journal of Computational Biology 15 (8), 1117-1131, 2008	38	2008
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies RM Waterhouse, S Aganezov, Y Anselmetti, J Lee, L Ruzzante, ... BMC biology 18, 1-20, 2020	36	2020
Whole genome duplications, multi-break rearrangements, and genome halving problem MA Alekseyev, PA Pevzner Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete …, 2007	35	2007
On the intersections of Fibonacci, Pell, and Lucas numbers MA Alekseyev INTEGERS 11 (3), 239-259, 2011	29	2011
Comparative genomics reveals birth and death of fragile regions in mammalian evolution MA Alekseyev, PA Pevzner Genome Biology 11, 1-15, 2010	29	2010
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly S Pham, D Antipov, A Sirotkin, G Tesler, P Pevzner, M Alekseyev Journal of Computational Biology 20 (4), 359-371, 2013	28	2013
Phylogenetic analysis of genome rearrangements among five mammalian orders H Luo, W Arndt, Y Zhang, G Shi, MA Alekseyev, J Tang, AL Hughes, ... Molecular phylogenetics and evolution 65 (3), 871-882, 2012	26	2012
Whole genome duplications and contracted breakpoint graphs MA Alekseyev, PA Pevzner SIAM Journal on Computing 36 (6), 1748, 2007	25	2007

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