| Competition between DNA methylation and transcription factors determines binding of NRF1 S Domcke, AF Bardet, P Adrian Ginno, D Hartl, L Burger, D Schübeler Nature 528 (7583), 575-579, 2015 | 476 | 2015 |
| YAP1 exerts its transcriptional control via TEAD-mediated activation of enhancers C Stein, AF Bardet, G Roma, S Bergling, I Clay, A Ruchti, C Agarinis, ... PLoS genetics 11 (8), e1005465, 2015 | 345 | 2015 |
| B7‐H3 is a potent inhibitor of human T‐cell activation: no evidence for B7‐H3 and TREML2 interaction J Leitner, C Klauser, WF Pickl, J Stöckl, O Majdic, AF Bardet, DP Kreil, ... European journal of immunology 39 (7), 1754-1764, 2009 | 296 | 2009 |
| Sensitivity of transcription factors to DNA methylation É Héberlé, AF Bardet Essays in biochemistry 63 (6), 727-741, 2019 | 227 | 2019 |
| High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species Q He, AF Bardet, B Patton, J Purvis, J Johnston, A Paulson, M Gogol, ... Nature genetics 43 (5), 414-420, 2011 | 152 | 2011 |
| A computational pipeline for comparative ChIP-seq analyses AF Bardet, Q He, J Zeitlinger, A Stark Nature protocols 7 (1), 45-61, 2012 | 142 | 2012 |
| Genome-wide analysis in the mouse embryo reveals the importance of DNA methylation for transcription integrity T Dahlet, A Argüeso Lleida, H Al Adhami, M Dumas, A Bender, ... Nature communications 11 (1), 3153, 2020 | 110 | 2020 |
| A Histone Deacetylase Adjusts Transcription Kinetics at Coding Sequences during Candida albicans Morphogenesis D Hnisz, AF Bardet, CJ Nobile, A Petryshyn, W Glaser, U Schöck, A Stark, ... PLoS genetics 8 (12), e1003118, 2012 | 101 | 2012 |
| Identification of transcription factor binding sites from ChIP-seq data at high resolution AF Bardet, J Steinmann, S Bafna, JA Knoblich, J Zeitlinger, A Stark Bioinformatics 29 (21), 2705-2713, 2013 | 78 | 2013 |
| Cis-regulatory requirements for tissue-specific programs of the circadian clock ACA Meireles-Filho, AF Bardet, JO Yáñez-Cuna, G Stampfel, A Stark Current Biology 24 (1), 1-10, 2014 | 43 | 2014 |
| TFmotifView: a webserver for the visualization of transcription factor motifs in genomic regions C Leporcq, Y Spill, D Balaramane, C Toussaint, M Weber, AF Bardet Nucleic acids research 48 (W1), W208-W217, 2020 | 31 | 2020 |
| E2F6 initiates stable epigenetic silencing of germline genes during embryonic development T Dahlet, M Truss, U Frede, H Al Adhami, AF Bardet, M Dumas, J Vallet, ... Nature communications 12 (1), 3582, 2021 | 27 | 2021 |
| Single amino acid repeats in signal peptides PP Łabaj, GG Leparc, AF Bardet, G Kreil, DP Kreil The FEBS Journal 277 (15), 3147-3157, 2010 | 17 | 2010 |
| A comparative methylome analysis reveals conservation and divergence of DNA methylation patterns and functions in vertebrates H Al Adhami, AF Bardet, M Dumas, E Cleroux, S Guibert, P Fauque, ... BMC biology 20 (1), 70, 2022 | 16 | 2022 |
| Loss of Apc rapidly impairs DNA methylation programs and cell fate decisions in Lgr5+ intestinal stem cells M Bruschi, L Garnier, E Cleroux, A Giordano, M Dumas, AF Bardet, ... Cancer Research 80 (11), 2101-2113, 2020 | 15 | 2020 |
| Pan-cancer predictions of transcription factors mediating aberrant DNA methylation D Detilleux, YG Spill, D Balaramane, M Weber, AF Bardet Epigenetics & chromatin 15 (1), 10, 2022 | 14 | 2022 |
| The BTB-domain transcription factor ZBTB2 recruits chromatin remodelers and a histone chaperone during the exit from pluripotency D Olivieri, S Paramanathan, AF Bardet, D Hess, SA Smallwood, U Elling, ... Journal of Biological Chemistry 297 (2), 2021 | 10 | 2021 |
| Systematic identification of factors involved in the silencing of germline genes in mouse embryonic stem cells H Al Adhami, J Vallet, C Schaal, P Schumacher, AF Bardet, M Dumas, ... Nucleic Acids Research 51 (7), 3130-3149, 2023 | 8 | 2023 |
| Practical Guide to ChIP-seq Data Analysis B Mifsud, K Zarnack, AF Bardet CRC Press, 2018 | 1 | 2018 |
| MethyLasso: a segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets D Balaramane, YG Spill, M Weber, AF Bardet bioRxiv, 2023.07. 27.550791, 2023 | | 2023 |
