Steve Kelly
TitleCited byYear
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
DM Emms, S Kelly
Genome Biology 16 (1), 1-14, 2015
3812015
TransRate: reference-free quality assessment of de novo transcriptome assemblies
R Smith-Unna, C Boursnell, R Patro, JM Hibberd, S Kelly
Genome research 26 (8), 1134-1144, 2016
1452016
Functional genomics in Trypanosoma brucei: a collection of vectors for the expression of tagged proteins from endogenous and ectopic gene loci
S Kelly, J Reed, S Kramer, L Ellis, H Webb, J Sunter, J Salje, N Marinsek, ...
Molecular and biochemical parasitology 154 (1), 103-109, 2007
1372007
Exon skipping is correlated with exon circularization
S Kelly, C Greenman, PR Cook, A Papantonis
Journal of molecular biology 427 (15), 2414-2417, 2015
1062015
Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns
FW Li, JC Villarreal, S Kelly, CJ Rothfels, M Melkonian, E Frangedakis, ...
Proceedings of the National Academy of Sciences 111 (18), 6672-6677, 2014
892014
Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes
S Kelly, B Wickstead, K Gull
Proceedings of the Royal Society B: Biological Sciences 278 (1708), 1009-1018, 2011
782011
Deep Evolutionary Comparison of Gene Expression Identifies Parallel Recruitment of Trans-Factors in Two Independent Origins of C4 Photosynthesis.
S Aubry, S Kelly, BM Kümpers, RD Smith-Unna, JM Hibberd
PLoS genetics 10 (6), e1004365, 2014
722014
Genome‐wide transcript analysis of early maize leaf development reveals gene cohorts associated with the differentiation of C4 Kranz anatomy
P Wang, S Kelly, JP Fouracre, JA Langdale
The Plant Journal 75 (4), 656-670, 2013
632013
MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments
PW Collingridge, S Kelly
BMC bioinformatics 13 (1), 117, 2012
632012
Genome-wide analysis reveals extensive functional interaction between DNA replication initiation and transcription in the genome of Trypanosoma brucei
C Tiengwe, L Marcello, H Farr, N Dickens, S Kelly, M Swiderski, ...
Cell reports 2 (1), 185-197, 2012
582012
Phylogenetic trees do not reliably predict feature diversity
S Kelly, R Grenyer, RW Scotland
Diversity and Distributions 20 (5), 600-612, 2014
532014
Shared origins of a key enzyme during the evolution of C4 and CAM metabolism
PA Christin, M Arakaki, CP Osborne, A Bräutigam, RF Sage, JM Hibberd, ...
Journal of experimental botany 65 (13), 3609-3621, 2014
502014
Simulated binding of transcription factors to active and inactive regions folds human chromosomes into loops, rosettes and topological domains
CA Brackley, J Johnson, S Kelly, PR Cook, D Marenduzzo
Nucleic Acids Research 44 (8), 3503-3512, 2016
492016
The impact of widespread regulatory neofunctionalization on homeolog gene evolution following whole-genome duplication in maize
TE Hughes, JA Langdale, S Kelly
Genome research 24 (8), 1348-1355, 2014
452014
A modular and optimized single marker system for generating Trypanosoma brucei cell lines expressing T7 RNA polymerase and the tetracycline repressor
SK Poon, L Peacock, W Gibson, K Gull, S Kelly
Open biology 2 (2), 110037, 2012
452012
Evolution of GOLDEN2-LIKE gene function in C3 and C4 plants
P Wang, J Fouracre, S Kelly, S Karki, U Gowik, S Aubry, MK Shaw, ...
Planta 237 (2), 481-495, 2013
392013
RSL class I genes controlled the development of epidermal structures in the common ancestor of land plants
H Proust, S Honkanen, VAS Jones, G Morieri, H Prescott, S Kelly, ...
Current Biology 26 (1), 93-99, 2016
382016
Comparative life cycle transcriptomics revises Leishmania mexicana genome annotation and links a chromosome duplication with parasitism of vertebrates
M Fiebig, S Kelly, E Gluenz
PLoS pathogens 11 (10), e1005186, 2015
382015
Phytomonas: trypanosomatids adapted to plant environments
E Jaskowska, C Butler, G Preston, S Kelly
PLoS pathogens 11 (1), e1004484, 2015
362015
Nitric oxide generated by the rice blast fungus Magnaporthe oryzae drives plant infection
M Samalova, J Johnson, M Illes, S Kelly, M Fricker, S Gurr
New Phytologist 197 (1), 207-222, 2013
362013
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Articles 1–20