| Microbial nutrient niches in the gut FC Pereira, D Berry Environmental microbiology 19 (4), 1366-1378, 2017 | 325 | 2017 |
| An automated Raman-based platform for the sorting of live cells by functional properties KS Lee, M Palatinszky, FC Pereira, J Nguyen, VI Fernandez, AJ Mueller, ... Nature microbiology 4 (6), 1035-1048, 2019 | 201 | 2019 |
| Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization FC Pereira, K Wasmund, I Cobankovic, N Jehmlich, CW Herbold, KS Lee, ... Nature communications 11 (1), 5104, 2020 | 191 | 2020 |
| The Spore Differentiation Pathway in the Enteric Pathogen Clostridium difficile FC Pereira, L Saujet, AR Tomé, M Serrano, M Monot, E Couture-Tosi, ... PLoS genetics 9 (10), e1003782, 2013 | 166 | 2013 |
| Genome-Wide Analysis of Cell Type-Specific Gene Transcription during Spore Formation in Clostridium difficile L Saujet, FC Pereira, M Serrano, O Soutourina, M Monot, PV Shelyakin, ... PLoS genetics 9 (10), e1003756, 2013 | 148 | 2013 |
| Adaptive Strategies and Pathogenesis of Clostridium difficile from In Vivo Transcriptomics C Janoir, C Denève, S Bouttier, F Barbut, S Hoys, L Caleechum, ... Infection and immunity 81 (10), 3757-3769, 2013 | 146 | 2013 |
| Microbial nitrogen limitation in the mammalian large intestine AT Reese, FC Pereira, A Schintlmeister, D Berry, M Wagner, LP Hale, ... Nature microbiology 3 (12), 1441-1450, 2018 | 120 | 2018 |
| Raman microspectroscopy for microbiology KS Lee, Z Landry, FC Pereira, M Wagner, D Berry, WE Huang, GT Taylor, ... Nature Reviews Methods Primers 1 (1), 80, 2021 | 80 | 2021 |
| The regulatory network controlling spore formation in Clostridium difficile L Saujet, FC Pereira, AO Henriques, I Martin-Verstraete FEMS microbiology letters 358 (1), 1-10, 2014 | 61 | 2014 |
| Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions KS Lee, FC Pereira, M Palatinszky, L Behrendt, U Alcolombri, D Berry, ... Nature Protocols 16 (2), 634-676, 2021 | 49 | 2021 |
| The SpoIIQ‐SpoIIIAH complex of Clostridium difficile controls forespore engulfment and late stages of gene expression and spore morphogenesis M Serrano, AD Crawshaw, M Dembek, JM Monteiro, FC Pereira, ... Molecular microbiology 100 (1), 204-228, 2016 | 46 | 2016 |
| A Recombination Directionality Factor Controls the Cell Type-Specific Activation of σK and the Fidelity of Spore Development in Clostridium difficile M Serrano, N Kint, FC Pereira, L Saujet, P Boudry, B Dupuy, ... PLoS genetics 12 (9), e1006312, 2016 | 32 | 2016 |
| Allspice and clove as source of triterpene acids activating the G protein-coupled bile acid receptor TGR5 A Ladurner, M Zehl, U Grienke, C Hofstadler, N Faur, FC Pereira, D Berry, ... Frontiers in pharmacology 8, 261859, 2017 | 28 | 2017 |
| A LysM Domain Intervenes in Sequential Protein-Protein and Protein-Peptidoglycan Interactions Important for Spore Coat Assembly in Bacillus subtilis FC Pereira, F Nunes, F Cruz, C Fernandes, AL Isidro, D Lousa, ... Journal of Bacteriology 201 (4), 10.1128/jb. 00642-18, 2019 | 24 | 2019 |
| A Fluorescent Reporter for Single Cell Analysis of Gene Expression in Clostridium difficile CP Cassona, F Pereira, M Serrano, AO Henriques Clostridium difficile: methods and protocols, 69-90, 2016 | 23 | 2016 |
| Differential modulation of the european sea bass gut microbiota by distinct insect meals F Rangel, P Enes, L Gasco, F Gai, B Hausmann, D Berry, A Oliva-Teles, ... Frontiers in Microbiology 13, 831034, 2022 | 21 | 2022 |
| SRS-FISH: A high-throughput platform linking microbiome metabolism to identity at the single-cell level X Ge*, FC Pereira*, M Mitteregger, D Berry, M Zhang, B Hausmann, ... Proceedings of the National Academy of Sciences 119 (26), e2203519119, 2022 | 19 | 2022 |
| Structure and assembly of a Clostridioides difficile spore polar appendage W Antunes, FC Pereira, C Feliciano, L Saujet, T Vultos, E Couture-Tosi, ... bioRxiv, 468637, 2018 | 10 | 2018 |
| Mid-Infrared Photothermal–Fluorescence In Situ Hybridization for Functional Analysis and Genetic Identification of Single Cells Y Bai, Z Guo, FC Pereira, M Wagner, JX Cheng Analytical Chemistry 95 (4), 2398-2405, 2023 | 3 | 2023 |
| Nutrient niche specificity for glycosaminoglycans is reflected in polysaccharide utilization locus architecture of gut Bacteroides species A Overbeeke, B Hausmann, G Nikolov, FC Pereira, CW Herbold, D Berry Frontiers in Microbiology 13, 1033355, 2022 | 2 | 2022 |
David BerryProfessor, University of ViennaVerified email at univie.ac.at
