Zeba Wunderlich
Title
Cited by
Cited by
Year
How a protein searches for its site on DNA: the mechanism of facilitated diffusion
L Mirny, M Slutsky, Z Wunderlich, A Tafvizi, J Leith, A Kosmrlj
Journal of Physics A: Mathematical and Theoretical 42 (43), 434013, 2009
2772009
Different gene regulation strategies revealed by analysis of binding motifs
Z Wunderlich, LA Mirny
Trends in genetics 25 (10), 434-440, 2009
2292009
How gene order is influenced by the biophysics of transcription regulation
G Kolesov, Z Wunderlich, ON Laikova, MS Gelfand, LA Mirny
Proceedings of the National Academy of Sciences 104 (35), 13948-13953, 2007
1802007
Spatial effects on the speed and reliability of protein–DNA search
Z Wunderlich, LA Mirny
Nucleic acids research 36 (11), 3570-3578, 2008
1162008
Using the topology of metabolic networks to predict viability of mutant strains
Z Wunderlich, LA Mirny
Biophysical journal 91 (6), 2304-2311, 2006
882006
Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function
W Tian, LV Zhang, M Taşan, FD Gibbons, OD King, J Park, Z Wunderlich, ...
Genome biology 9 (1), 1-21, 2008
832008
SPINE 2: a system for collaborative structural proteomics within a federated database framework
CS Goh, N Lan, N Echols, SM Douglas, D Milburn, P Bertone, R Xiao, ...
Nucleic acids research 31 (11), 2833-2838, 2003
782003
Depleting Gene Activities in Early Drosophila Embryos with the “Maternal-Gal4–shRNA” System
MV Staller, D Yan, S Randklev, MD Bragdon, ZB Wunderlich, R Tao, ...
Genetics 193 (1), 51-61, 2013
712013
A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila
CC Fowlkes, KB Eckenrode, MD Bragdon, M Meyer, Z Wunderlich, ...
PLoS Genetics 7 (10), e1002346, 2011
492011
Krüppel expression levels are maintained through compensatory evolution of shadow enhancers
Z Wunderlich, MDJ Bragdon, BJ Vincent, JA White, J Estrada, AH DePace
Cell reports 12 (11), 1740-1747, 2015
462015
Assessing model accuracy using the homology modeling automatically software
A Bhattacharya, Z Wunderlich, D Monleon, R Tejero, GT Montelione
Proteins: Structure, Function, and Bioinformatics 70 (1), 105-118, 2008
442008
Shadow enhancers enable Hunchback bifunctionality in the Drosophila embryo
MV Staller, BJ Vincent, MDJ Bragdon, T Lydiard-Martin, Z Wunderlich, ...
Proceedings of the National Academy of Sciences 112 (3), 785-790, 2015
422015
The protein target list of the Northeast Structural Genomics Consortium
Z Wunderlich, TB Acton, J Liu, G Kornhaber, J Everett, P Carter, N Lan, ...
PROTEINS: Structure, Function, and Bioinformatics 56 (2), 181-187, 2004
342004
Modeling transcriptional networks in Drosophila development at multiple scales
Z Wunderlich, AH DePace
Current opinion in genetics & development 21 (6), 711-718, 2011
282011
Dissecting sources of quantitative gene expression pattern divergence between Drosophila species
Z Wunderlich, MD Bragdon, KB Eckenrode, T Lydiard‐Martin, ...
Molecular systems biology 8 (1), 604, 2012
262012
Using genome-wide measurements for computational prediction of SH2–peptide interactions
Z Wunderlich, LA Mirny
Nucleic acids research 37 (14), 4629-4641, 2009
222009
A gene expression atlas of a bicoid-depleted Drosophila embryo reveals early canalization of cell fate
MV Staller, CC Fowlkes, MDJ Bragdon, Z Wunderlich, J Estrada, ...
Development 142, 587-596, 2015
202015
Dissecting the sharp response of a canonical developmental enhancer reveals multiple sources of cooperativity
J Park, J Estrada, G Johnson, BJ Vincent, C Ricci-Tam, MDJ Bragdon, ...
Elife 8, e41266, 2019
192019
Comparing mRNA levels using in situ hybridization of a target gene and co-stain
Z Wunderlich, MD Bragdon, AH DePace
Methods 68 (1), 233-241, 2014
152014
Hunchback is counter-repressed to regulate even-skipped stripe 2 expression in Drosophila embryos
BJ Vincent, MV Staller, F Lopez-Rivera, MDJ Bragdon, ECG Pym, ...
PLoS genetics 14 (9), e1007644, 2018
102018
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