David Rueda
David Rueda
Professor, Department of Medicine, Imperial College London
Verified email at imperial.ac.uk - Homepage
Title
Cited by
Cited by
Year
Single-molecule transition-state analysis of RNA folding
G Bokinsky, D Rueda, VK Misra, MM Rhodes, A Gordus, HP Babcock, ...
Proceedings of the National Academy of Sciences 100 (16), 9302-9307, 2003
2402003
Single-molecule enzymology of RNA: essential functional groups impact catalysis from a distance
D Rueda, G Bokinsky, MM Rhodes, MJ Rust, X Zhuang, NG Walter
Proceedings of the National Academy of Sciences 101 (27), 10066-10071, 2004
1762004
Single-molecule studies of group II intron ribozymes
M Steiner, KS Karunatilaka, RKO Sigel, D Rueda
Proceedings of the National Academy of Sciences 105 (37), 13853-13858, 2008
1102008
Reaction pathway of the trans-acting hepatitis delta virus ribozyme: a conformational change accompanies catalysis
MJB Pereira, DA Harris, D Rueda, NG Walter
Biochemistry 41 (3), 730-740, 2002
1102002
RNA looping by PTB: Evidence using FRET and NMR spectroscopy for a role in splicing repression
R Lamichhane, GM Daubner, J Thomas-Crusells, SD Auweter, ...
Proceedings of the National Academy of Sciences 107 (9), 4105-4110, 2010
1072010
RNA folding dynamics by single-molecule fluorescence resonance energy transfer
R Zhao, D Rueda
Methods 49 (2), 112-117, 2009
1052009
Rad51 paralogs remodel pre-synaptic Rad51 filaments to stimulate homologous recombination
MRG Taylor, M Špírek, KR Chaurasiya, JD Ward, R Carzaniga, X Yu, ...
Cell 162 (2), 271-286, 2015
972015
Local conformational changes in the catalytic core of the trans-acting hepatitis delta virus ribozyme accompany catalysis
DA Harris, D Rueda, NG Walter
Biochemistry 41 (40), 12051-12061, 2002
942002
Cryo-EM structures of the eukaryotic replicative helicase bound to a translocation substrate
FA Ali, L Renault, J Gannon, HL Gahlon, A Kotecha, JC Zhou, D Rueda, ...
Nature Communications 7, 10708, 2016
892016
Single-molecule FRET of protein–nucleic acid and protein–protein complexes: surface passivation and immobilization
R Lamichhane, A Solem, W Black, D Rueda
Methods 52 (2), 192-200, 2010
882010
A rugged free energy landscape separates multiple functional RNA folds throughout denaturation
MA Ditzler, D Rueda, J Mo, K Hĺkansson, NG Walter
Nucleic acids research 36 (22), 7088-7099, 2008
882008
Single-molecule analysis of Mss116-mediated group II intron folding
KS Karunatilaka, A Solem, AM Pyle, D Rueda
Nature 467 (7318), 935-939, 2010
852010
Single-molecule measurements of synthesis by DNA polymerase with base-pair resolution
TD Christian, LJ Romano, D Rueda
Proceedings of the National Academy of Sciences 106 (50), 21109-21114, 2009
812009
Fluorogenic RNA Mango aptamers for imaging small non-coding RNAs in mammalian cells
A Autour, SCY Jeng, AD Cawte, A Abdolahzadeh, A Galli, ...
Nature communications 9 (1), 1-12, 2018
772018
Diffusely bound Mg2+ ions slightly reorient stems I and II of the hammerhead ribozyme to increase the probability of formation of the catalytic core
D Rueda, K Wick, SE McDowell, NG Walter
Biochemistry 42 (33), 9924-9936, 2003
772003
In the fluorescent spotlight: global and local conformational changes of small catalytic RNAs
NG Walter, DA Harris, MJB Pereira, D Rueda
Biopolymers: Original Research on Biomolecules 61 (3), 224-242, 2002
732002
The 5‘ Leader of Precursor tRNAAsp Bound to the Bacillus subtilis RNase P Holoenzyme Has an Extended Conformation
D Rueda, J Hsieh, JJ Day-Storms, CA Fierke, NG Walter
Biochemistry 44 (49), 16130-16139, 2005
702005
Single-molecule analysis of protein-free U2–U6 snRNAs
Z Guo, KS Karunatilaka, D Rueda
Nature structural & molecular biology 16 (11), 1154-1159, 2009
682009
Allosteric tertiary interactions preorganize the c-di-GMP riboswitch and accelerate ligand binding
S Wood, AR Ferré-D’Amaré, D Rueda
ACS chemical biology 7 (5), 920-927, 2012
652012
Trans-acting hepatitis delta virus ribozyme: catalytic core and global structure are dependent on the 5 ‘substrate sequence
S Jeong, J Sefcikova, RA Tinsley, D Rueda, NG Walter
Biochemistry 42 (25), 7727-7740, 2003
642003
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