David Rueda
David Rueda
Professor, Faculty of Medicine, Imperial College London
Verified email at - Homepage
Cited by
Cited by
Single-molecule transition-state analysis of RNA folding
G Bokinsky, D Rueda, VK Misra, MM Rhodes, A Gordus, HP Babcock, ...
Proceedings of the National Academy of Sciences 100 (16), 9302-9307, 2003
Single-molecule enzymology of RNA: essential functional groups impact catalysis from a distance
D Rueda, G Bokinsky, MM Rhodes, MJ Rust, X Zhuang, NG Walter
Proceedings of the National Academy of Sciences 101 (27), 10066-10071, 2004
Fluorogenic RNA Mango aptamers for imaging small non-coding RNAs in mammalian cells
A Autour, S CY Jeng, A D Cawte, A Abdolahzadeh, A Galli, ...
Nature communications 9 (1), 1-12, 2018
Rad51 paralogs remodel pre-synaptic Rad51 filaments to stimulate homologous recombination
MRG Taylor, M Špírek, KR Chaurasiya, JD Ward, R Carzaniga, X Yu, ...
Cell 162 (2), 271-286, 2015
Single-molecule studies of group II intron ribozymes
M Steiner, KS Karunatilaka, RKO Sigel, D Rueda
Proceedings of the National Academy of Sciences 105 (37), 13853-13858, 2008
RNA looping by PTB: Evidence using FRET and NMR spectroscopy for a role in splicing repression
R Lamichhane, GM Daubner, J Thomas-Crusells, SD Auweter, ...
Proceedings of the National Academy of Sciences 107 (9), 4105-4110, 2010
RNA folding dynamics by single-molecule fluorescence resonance energy transfer
R Zhao, D Rueda
Methods 49 (2), 112-117, 2009
Cryo-EM structures of the eukaryotic replicative helicase bound to a translocation substrate
FA Ali, L Renault, J Gannon, HL Gahlon, A Kotecha, JC Zhou, D Rueda, ...
Nature Communications 7, 10708, 2016
Structure and dynamics of the yeast SWR1-nucleosome complex
O Willhoft, M Ghoneim, CL Lin, EYD Chua, M Wilkinson, Y Chaban, ...
Science 362 (6411), 2018
Single-molecule FRET of protein–nucleic acid and protein–protein complexes: surface passivation and immobilization
R Lamichhane, A Solem, W Black, D Rueda
Methods 52 (2), 192-200, 2010
Reaction pathway of the trans-acting hepatitis delta virus ribozyme: a conformational change accompanies catalysis
MJB Pereira, DA Harris, D Rueda, NG Walter
Biochemistry 41 (3), 730-740, 2002
Single-molecule measurements of synthesis by DNA polymerase with base-pair resolution
TD Christian, LJ Romano, D Rueda
Proceedings of the National Academy of Sciences 106 (50), 21109-21114, 2009
Local conformational changes in the catalytic core of the trans-acting hepatitis delta virus ribozyme accompany catalysis
DA Harris, D Rueda, NG Walter
Biochemistry 41 (40), 12051-12061, 2002
A rugged free energy landscape separates multiple functional RNA folds throughout denaturation
MA Ditzler, D Rueda, J Mo, K Hĺkansson, NG Walter
Nucleic acids research 36 (22), 7088-7099, 2008
Single-molecule analysis of Mss116-mediated group II intron folding
KS Karunatilaka, A Solem, AM Pyle, D Rueda
Nature 467 (7318), 935-939, 2010
Single-cell heterogeneity and cell-cycle-related viral gene bursts in the human leukaemia virus HTLV-1
MR Billman, D Rueda, CRM Bangham
Wellcome open research 2, 2017
In the fluorescent spotlight: global and local conformational changes of small catalytic RNAs
NG Walter, DA Harris, MJB Pereira, D Rueda
Biopolymers: Original Research on Biomolecules 61 (3), 224-242, 2002
Molecular crowding accelerates ribozyme docking and catalysis
BP Paudel, D Rueda
Journal of the American Chemical Society 136 (48), 16700-16703, 2014
Diffusely bound Mg2+ ions slightly reorient stems I and II of the hammerhead ribozyme to increase the probability of formation of the catalytic core
D Rueda, K Wick, SE McDowell, NG Walter
Biochemistry 42 (33), 9924-9936, 2003
DNA stretching induces Cas9 off-target activity
MD Newton, BJ Taylor, RPC Driessen, L Roos, N Cvetesic, S Allyjaun, ...
Nature Structural & Molecular Biology 26 (3), 185-192, 2019
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