David Rueda

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Nils G WalterUniversity of Michigan, Ann ArborVerified email at umich.edu
Matthew D NewtonFrancis Crick InstituteVerified email at crick.ac.uk
Rajan LamichhaneAssistant Professor, The University of Tennessee KnoxvilleVerified email at utk.edu
Peter UnrauProfessor, MBB, Simon Fraser UniversityVerified email at sfu.ca
Bishnu PaudelResearch FellowVerified email at uow.edu.au
Xiaowei ZhuangProfessor of Chemistry and Chemical Biology, Harvard UniversityVerified email at chemistry.harvard.edu
Gregory BokinskyDelft University of TechnologyVerified email at tudelft.nl
Hailey GahlonGroup Leader, ETH ZurichVerified email at hest.ethz.ch
Mohamed GhoneimUniversity of ColoradoVerified email at cuanschutz.edu
Kathy ChaurasiyaPost-doctoral Fellow, Leiden UniversityVerified email at lic.leidenuniv.nl
Thomas RizzoEPFLVerified email at epfl.ch
Oleg BoyarkineMER at EPFLVerified email at epfl.ch
Andrew FeigProfessor of Chemistry, Wayne State UniversityVerified email at chem.wayne.edu
Alessandro CostaPrincipal Group leader, The Francis Crick Institute, LondonVerified email at crick.ac.uk
Ludovic RenaultNeCEN - Leiden UniversityVerified email at biology.leidenuniv.nl
Mark A. DitzlerResearch Scientist, NASA Ames Research CenterVerified email at nasa.gov
Carol FierkeTexas A&M UniversityVerified email at tamu.edu
Vinod K. Misra, MD PhDCentral Michigan University School of Medicine, Chldren's Hospital of MichiganVerified email at cmich.edu
Andrew GordusAssistant Professor of Biology, Johns Hopkins UniversityVerified email at jhu.edu
Malgorzata Jaszczur, Ph.D.University of Southern California, Los Angeles, CAVerified email at usc.edu

David Rueda

Professor, Faculty of Medicine, Imperial College London

Verified email at imperial.ac.uk - Homepage

Molecular and Cellular Biophysics


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Single-molecule transition-state analysis of RNA folding G Bokinsky, D Rueda, VK Misra, MM Rhodes, A Gordus, HP Babcock, ... Proceedings of the National Academy of Sciences 100 (16), 9302-9307, 2003	265	2003
Fluorogenic RNA Mango aptamers for imaging small non-coding RNAs in mammalian cells A Autour, S CY Jeng, A D. Cawte, A Abdolahzadeh, A Galli, ... Nature communications 9 (1), 656, 2018	222	2018
Single-molecule enzymology of RNA: essential functional groups impact catalysis from a distance D Rueda, G Bokinsky, MM Rhodes, MJ Rust, X Zhuang, NG Walter Proceedings of the National Academy of Sciences 101 (27), 10066-10071, 2004	188	2004
Rad51 paralogs remodel pre-synaptic Rad51 filaments to stimulate homologous recombination MRG Taylor, M Špírek, KR Chaurasiya, JD Ward, R Carzaniga, X Yu, ... Cell 162 (2), 271-286, 2015	162	2015
Structure and dynamics of the yeast SWR1-nucleosome complex O Willhoft, M Ghoneim, CL Lin, EYD Chua, M Wilkinson, Y Chaban, ... Science 362 (6411), 2018	148	2018
RNA looping by PTB: evidence using FRET and NMR spectroscopy and for a role in splicing repression R Lamichhane, GM Daubner, J Thomas-Crusells, SD Auweter, ... Biophysical Journal 98 (3), 72a-73a, 2010	139	2010
RNA folding dynamics by single-molecule fluorescence resonance energy transfer R Zhao, D Rueda Methods 49 (2), 112-117, 2009	131	2009
Cryo-EM structures of the eukaryotic replicative helicase bound to a translocation substrate FA Ali, L Renault, J Gannon, HL Gahlon, A Kotecha, JC Zhou, D Rueda, ... Nature Communications 7, 10708, 2016	127	2016
Single-molecule studies of group II intron ribozymes M Steiner, KS Karunatilaka, RKO Sigel, D Rueda Proceedings of the National Academy of Sciences 105 (37), 13853-13858, 2008	127	2008
DNA stretching induces Cas9 off-target activity MD Newton, BJ Taylor, RPC Driessen, L Roos, N Cvetesic, S Allyjaun, ... Nature structural & molecular biology 26 (3), 185-192, 2019	123	2019
Single-molecule FRET of protein–nucleic acid and protein–protein complexes: surface passivation and immobilization R Lamichhane, A Solem, W Black, D Rueda Methods 52 (2), 192-200, 2010	122	2010
Reaction pathway of the trans-acting hepatitis delta virus ribozyme: a conformational change accompanies catalysis MJB Pereira, DA Harris, D Rueda, NG Walter Biochemistry 41 (3), 730-740, 2002	110	2002
Live cell imaging of single RNA molecules with fluorogenic Mango II arrays AD Cawte, PJ Unrau, DS Rueda Nature communications 11 (1), 1283, 2020	109	2020
Single-molecule measurements of synthesis by DNA polymerase with base-pair resolution TD Christian, LJ Romano, D Rueda Proceedings of the National Academy of Sciences 106 (50), 21109-21114, 2009	104	2009
Local conformational changes in the catalytic core of the trans-acting hepatitis delta virus ribozyme accompany catalysis DA Harris, D Rueda, NG Walter Biochemistry 41 (40), 12051-12061, 2002	98	2002
A rugged free energy landscape separates multiple functional RNA folds throughout denaturation MA Ditzler, D Rueda, J Mo, K Håkansson, NG Walter Nucleic acids research 36 (22), 7088-7099, 2008	97	2008
Single-molecule analysis of Mss116-mediated group II intron folding KS Karunatilaka, A Solem, AM Pyle, D Rueda Biophysical Journal 98 (3), 472a, 2010	95	2010
Molecular crowding accelerates ribozyme docking and catalysis BP Paudel, D Rueda Journal of the American Chemical Society 136 (48), 16700-16703, 2014	93	2014
Single-cell heterogeneity and cell-cycle-related viral gene bursts in the human leukaemia virus HTLV-1 MR Billman, D Rueda, CRM Bangham Wellcome open research 2, 2017	92	2017
Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells M Barbieri, SQ Xie, ET Triglia, AM Chiariello, S Bianco, I de Santiago, ... Nat Struct Mol Biol. 24, 515-524, 2017	87	2017

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