Arrate Muñoz Barrutia

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Carlos Ortiz de SolorzanoFull Professor - CIMA - Universidad de NavarraVerified email at unav.es
Michael UnserProfessor, Biomedical Imaging Group, Ecole Polytechnique Fédérale de Lausanne (EPFL), SwitzerlandVerified email at epfl.ch
Estibaliz Gómez-de-MariscalPostdoc Henriques Lab, Instituto Gulbenkian de Ciência, Oeiras, PortugalVerified email at igc.gulbenkian.pt
Ignacio Arganda-CarrerasIkerbasque Associate Researcher at University of the Basque Country, Biofisika Institute and DIPCVerified email at ehu.eus
JUAN JOSE VAQUEROProfessor, Universidad Carlos III de MadridVerified email at ing.uc3m.es
Daniel SageBiomedical Imaging Group, Center for Imaging, EPFL, Lausanne, SwitzerlandVerified email at epfl.ch
Mario CeresaJoint Research Center, European CommissionVerified email at ec.europa.eu
Denis WirtzT.H. Smoot Professor of Engineering Science, Pathology, and Oncology; VP Research, Johns HopkinsVerified email at jhu.edu
Wei OuyangAssistant Professor, Science for Life Laboratory | KTH Royal Institute of Technology, StockholmVerified email at kth.se
DANIEL GARCIA GONZALEZUniversidad Carlos III de MadridVerified email at ing.uc3m.es
Pedro M. GordalizaCenter for Biomedical Imaging (CIBM), Universidad Carlos III de MadridVerified email at unil.ch
Thomas PengoDirector of Research Informatics, U of MinnesotaVerified email at umn.edu
Carlos García-López-de-HaroVerified email at alumnos.uc3m.es
Carlos Oscar S. Sorzano (ORCID:000...National Center of Biotechnology (CSIC)Verified email at cnb.csic.es
Clara Gomez-CruzPhD student, Universidad Carlos III de MadridVerified email at pa.uc3m.es
Javier J ZuluetaProfessor of Medicine, Chief, Pulmonary, Critical Care and Sleep Medicine, Mount Sinai MorningsideVerified email at mountsinai.org
Daniel Franco-BarrancoPostdoc at MRC Laboratory of Molecular Biology (LMB) & Donostia International Physics Center (DIPC)Verified email at dipc.org
Jan KybicFaculty of Electrical Engineering, Czech Technical University in PragueVerified email at fel.cvut.cz
Maria J. Ledesma-CarbayoFull Professor, Universidad Politécnica de MadridVerified email at upm.es
Pablo Delgado-RodriguezPhD student, Universidad Carlos III de MadridVerified email at pa.uc3m.es

Arrate Muñoz Barrutia

Professor, Univ. Carlos III de Madrid; Instituto de Investigación Sanitaria Gregorio Marañón

Verified email at ing.uc3m.es - Homepage

image processing biomedical imaging microscopy radiology


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3D reconstruction of histological sections: Application to mammary gland tissue I Arganda‐Carreras, R Fernández‐González, A Muñoz‐Barrutia, ... Microscopy Research and Technique 73 (11), 1019-1029, 2010	693	2010
Combination strategies in multi-atlas image segmentation: Application to brain MR data X Artaechevarria, A Muñoz-Barrutia, C Ortiz-de-Solorzano Medical Imaging, IEEE Transactions on 28 (8), 1266-1277, 2009	658	2009
An objective comparison of cell-tracking algorithms V Ulman, M Maška, KEG Magnusson, O Ronneberger, C Haubold, ... Nature methods 14 (12), 1141-1152, 2017	603	2017
A benchmark for comparison of cell tracking algorithms M Maška, V Ulman, D Svoboda, P Matula, P Matula, C Ederra, A Urbiola, ... Bioinformatics 30 (11), 1609-1617, 2014	503	2014
Adiposoft: automated software for the analysis of white adipose tissue cellularity in histological sections M Galarraga, J Campión, A Muñoz-Barrutia, N Boqué, H Moreno, ... Journal of Lipid Research 53 (12), 2791-2796, 2012	421	2012
DeepImageJ: A user-friendly environment to run deep learning models in ImageJ E Gomez-de-Mariscal, C Garcia-Lopez-de-Haro, W Ouyang, L Donati, ... Nature Methods 18, 1192-1195, 2021	208	2021
Characterization of three-dimensional cancer cell migration in mixed collagen-Matrigel scaffolds using microfluidics and image analysis M Anguiano, C Castilla, M Maška, C Ederra, R Peláez, X Morales, ... PloS one 12 (2), e0171417, 2017	183	2017
Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: the VESSEL12 study RD Rudyanto, S Kerkstra, EM van Rikxoort, C Fetita, PY Brillet, C Lefevre, ... Medical image analysis 18 (7), 1217-1232, 2014	179	2014
Automated neuromelanin imaging as a diagnostic biomarker for Parkinson's disease G Castellanos, MA Fernández‐Seara, O Lorenzo‐Betancor, ... Movement Disorders 30 (7), 945-952, 2015	178	2015
Least-squares image resizing using finite differences A Muñoz-Barrutia, T Blu, M Unser IEEE Trans. Image Process 10 (9), 1365-1378, 2001	162	2001
Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model M Maska, O Danek, S Garasa, A Rouzaut, A Muñoz-Barrutia, OS Carlos IEEE Transactions on Medical Imaging 32 (6), 995-1006, 2013	142	2013
ANHIR: automatic non-rigid histological image registration challenge J Borovec, J Kybic, I Arganda-Carreras, DV Sorokin, G Bueno, ... IEEE transactions on medical imaging 39 (10), 3042-3052, 2020	140	2020
Continuous wavelet transform with arbitrary scales and O (N) complexity A Muñoz, R Ertlé, M Unser Signal processing 82 (5), 749-757, 2002	112	2002
The Cell Tracking Challenge: 10 years of objective benchmarking M Maška, V Ulman, P Delgado-Rodriguez, E Gómez-de-Mariscal, ... Nature Methods, 2023	102	2023
Applications of Light Sheet Microscopy in Microdevices I Albert-Smet, A Marcos-Vidal, JJ Vaquero, M Desco, A Muñoz-Barrutia, ... Frontiers in Neuroanatomy 13, 1, 2019	81	2019
Use of the p-values as a size-dependent function to address practical differences when analyzing large datasets E Gomez-de-Mariscal, V Guerrero, A Sneider, H Jayatilaka, JM Phillip, ... Scientific Reports 11 (20942), 2021	78	2021
New Strategies for Echocardiographic Evaluation of Left Ventricular Function in a Mouse Model of Long-Term Myocardial Infarction C Benavides-Vallve, D Corbacho, O Iglesias-Garcia, B Pelacho, E Albiasu, ... PloS one 7 (7), e41691, 2012	69	2012
Quantification of lung damage in an elastase-induced mouse model of emphysema A Muñoz-Barrutia, M Ceresa, X Artaechevarria, LM Montuenga, ... Journal of Biomedical Imaging 2012, 5, 2012	69	2012
Segmentation of touching cell nuclei using a two-stage graph cut model O Daněk, P Matula, C Ortiz-de-Solórzano, A Muñoz-Barrutia, M Maška, ... Scandinavian Conference on Image Analysis, 410-419, 2009	64	2009
Benchmarking of Image Registration Methods for Differently Stained Histological Slides J Borovec, A Munoz-Barrutia, J Kybic 2018 25th IEEE International Conference on Image Processing (ICIP), 3368-3372, 2018	61	2018

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