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Ana Sousa
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Positive epistasis drives the acquisition of multidrug resistance
S Trindade, A Sousa, KB Xavier, F Dionisio, MG Ferreira, I Gordo
PLoS genetics 5 (7), e1000578, 2009
2642009
The First Steps of Adaptation of Escherichia coli to the Gut Are Dominated by Soft Sweeps
J Barroso-Batista, A Sousa, M Lourenço, ML Bergman, D Sobral, ...
PLoS genetics 10 (3), e1004182, 2014
1442014
Cost of antibiotic resistance and the geometry of adaptation
A Sousa, S Magalhaes, I Gordo
Molecular biology and evolution 29 (5), 1417-1428, 2012
882012
Rates of fitness decline and rebound suggest pervasive epistasis
L Perfeito, A Sousa, T Bataillon, I Gordo
Evolution 68 (1), 150-162, 2014
762014
The Genetic Basis of Escherichia coli Pathoadaptation to Macrophages
M Miskinyte, A Sousa, RS Ramiro, JAM de Sousa, J Kotlinowski, ...
PLoS pathogens 9 (12), e1003802, 2013
702013
Antibiotic resistance and stress in the light of Fisher's model
S Trindade, A Sousa, I Gordo
Evolution: International Journal of Organic Evolution 66 (12), 3815-3824, 2012
702012
Horizontal gene transfer overrides mutation in Escherichia coli colonizing the mammalian gut
N Frazão, A Sousa, M Lässig, I Gordo
Proceedings of the National Academy of Sciences 116 (36), 17906-17915, 2019
682019
Rates of transposition in Escherichia coli
A Sousa, C Bourgard, LM Wahl, I Gordo
Biology letters 9 (6), 20130838, 2013
642013
Fitness effects of mutations in bacteria
I Gordo, L Perfeito, A Sousa
Microbial Physiology 21 (1-2), 20-35, 2011
532011
Multiple resistance at no cost: rifampicin and streptomycin a dangerous liaison in the spread of antibiotic resistance
P Durão, S Trindade, A Sousa, I Gordo
Molecular biology and evolution 32 (10), 2675-2680, 2015
422015
A Mutational Hotspot and Strong Selection Contribute to the Order of Mutations Selected for during Escherichia coli Adaptation to the Gut
AS Marta Lourenço, Ricardo S. Ramiro, Daniela Guleresi, João Barroso-Batista ...
PLOS Genetics, 2016
352016
Evolution of commensal bacteria in the intestinal tract of mice
A Sousa, N Frazão, R S. Ramiro, I Gordo
Current Opinion in Microbiology 38, 114-121, 2017
302017
rRNA Intergenic Spacer Regions for Phylogenetic Analysis of Rickettsia Species
L Vitorino, L ZÉ‐ZÉ, A Sousa, F Bacellar, R Tenreiro
Annals of the New york Academy of Sciences 990 (1), 726-733, 2003
302003
Recurrent Reverse Evolution Maintains Polymorphism after Strong Bottlenecks in Commensal Gut Bacteria
A Sousa, R S. Ramiro, J Barroso-Batista, D Gu¨leresi, ...
Molecular Biology and Evolution, 2017
272017
The landscape of adaptive evolution of a gut commensal bacteria in aging mice
HC Barreto, A Sousa, I Gordo
Current Biology 30 (6), 1102-1109. e5, 2020
212020
Potential for adaptation overrides cost of resistance
J Moura de Sousa, A Sousa, C Bourgard, I Gordo
Future microbiology 10 (9), 1415-1431, 2015
192015
Trade-Offs of Escherichia coli Adaptation to an Intracellular Lifestyle in Macrophages
M Azevedo, A Sousa, J Moura de Sousa, JA Thompson, JT Proença, ...
PLoS One 11 (1), e0146123, 2016
112016
Exploring tree-building methods and distinct molecular data to recover a known asymmetric phage phylogeny
A Sousa, L Zé-Zé, P Silva, R Tenreiro
Molecular phylogenetics and evolution 48 (2), 563-573, 2008
92008
Mutation, selection and genetic interactions in bacteria
I Gordo, A Sousa
Encyclopedia of life sciences (ELS), 1-8, 2010
62010
Mutation accumulation and horizontal gene transfer in Escherichia coli colonizing the gut of old mice
GI Barreto HC, Frazão N, SOUSA, A, Konrad A
Communicative & Integrative Biology, 2020
42020
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