Wim Vranken

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Tim StevensMRC Laboratory of Molecular BiologyVerified email at stevens.net
Geerten W. VuisterProfessor of Structural BiologyVerified email at le.ac.uk
Jurgen F. DoreleijersAvans University of Applied SciencesVerified email at avans.nl
Tom LenaertsProfessor Computer Science, Université Libre de BruxellesVerified email at ulb.ac.be
Daniele RaimondiESAT - KU LeuvenVerified email at kuleuven.be
Peter TompaPofessor of biochemistry, VIB SBRC, BrusselsVerified email at vub.ac.be
Gabriele OrlandoPost Doc, Switch Lab, KULeuvenVerified email at kuleuven.be
Alexandre M.J.J. BonvinProfessor of Computational Structural Biology, Bijvoet Center for Biomolecular Research, Faculty ofVerified email at uu.nl
Rita PancsaHungarian Academy of Sciences Research Centre for Natural Sciences, Institute of EnzymologyVerified email at ttk.mta.hu
Michael NilgesInstitut PasteurVerified email at pasteur.fr
Michele VendruscoloProfessor of Biophysics, University of CambridgeVerified email at cam.ac.uk
Elisa CiliaUniversité Libre de BruxellesVerified email at ulb.ac.be
Vriend GProfessor Bioinformatics RadboudUMC NijmegenVerified email at radboudumc.nl
Sander NabuursLead Pharma Medicine, OssVerified email at leadpharma.com
Andrea CavalliUniversity of Cambridge, UK. IRB Bellinzona, SwitzerlandVerified email at irb.usi.ch
Gaetano T MontelioneConstellation Chair in Structural BioinformaticsVerified email at rpi.edu
Aart NederveenRadiology, Academic Medical Center (AMC), AmsterdamVerified email at amc.nl
Kim HenrickVerified email at rcsb.rutgers.edu
Torsten HerrmannResearch Director, Institut de Biologie Structurale (IBS), Grenoble, FranceVerified email at ibs.fr
Helen M. BermanProfessor of Chemistry and Chemical BiologyVerified email at rcsb.rutgers.edu

Wim Vranken

Research professor, Vrije Universiteit Brussel, Belgium

Verified email at vub.be - Homepage

Structural biology computational biology bioinformatics NMR


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The CCPN data model for NMR spectroscopy: development of a software pipeline WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, ... Proteins: Structure, Function, and Bioinformatics 59 (4), 687-696, 2005	2601	2005
ACPYPE-Antechamber python parser interface AWS Da Silva, WF Vranken BMC research notes 5 (1), 1-8, 2012	1184	2012
RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank AJ Nederveen, JF Doreleijers, W Vranken, Z Miller, CAEM Spronk, ... PROTEINS: Structure, Function, and Bioinformatics 59 (4), 662-672, 2005	345	2005
Determination of secondary structure populations in disordered states of proteins using nuclear magnetic resonance chemical shifts C Camilloni, A De Simone, WF Vranken, M Vendruscolo Biochemistry 51 (11), 2224-2231, 2012	289	2012
PDBe: protein data bank in Europe S Velankar, C Best, B Beuth, CH Boutselakis, N Cobley, ... Nucleic acids research 38 (suppl_1), D308-D317, 2010	249	2010
DisProt 7.0: a major update of the database of disordered proteins D Piovesan, F Tabaro, I Mičetić, M Necci, F Quaglia, CJ Oldfield, ... Nucleic acids research 45 (D1), D219-D227, 2017	223	2017
Determination of the three-dimensional solution structure of Raphanus sativus antifungal protein 1 by 1H NMR F Fant, W Vranken, W Broekaert, F Borremans Journal of molecular biology 279 (1), 257-270, 1998	207	1998
WeNMR: structural biology on the grid TA Wassenaar, M Van Dijk, N Loureiro-Ferreira, G Van Der Schot, ... Journal of Grid Computing 10 (4), 743-767, 2012	177	2012
Remediation of the protein data bank archive K Henrick, Z Feng, WF Bluhm, D Dimitropoulos, JF Doreleijers, S Dutta, ... Nucleic acids research 36 (suppl_1), D426-D433, 2007	161	2007
MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins D Piovesan, F Tabaro, L Paladin, M Necci, I Mičetić, C Camilloni, N Davey, ... Nucleic acids research 46 (D1), D471-D476, 2018	149	2018
E-MSD: the European bioinformatics institute macromolecular structure database H Boutselakis, D Dimitropoulos, J Fillon, A Golovin, K Henrick, A Hussain, ... Nucleic acids research 31 (1), 458-462, 2003	137	2003
CING: an integrated residue-based structure validation program suite JF Doreleijers, AWS Da Silva, E Krieger, SB Nabuurs, CAEM Spronk, ... Journal of biomolecular NMR 54 (3), 267-283, 2012	128	2012
The CCPN project: an interim report on a data model for the NMR community R Fogh, J Ionides, E Ulrich, W Boucher, W Vranken, JP Linge, M Habeck, ... Nature structural biology 9 (6), 416-418, 2002	126	2002
Recommendations of the wwPDB NMR validation task force GT Montelione, M Nilges, A Bax, P Güntert, T Herrmann, JS Richardson, ... Structure 21 (9), 1563-1570, 2013	123	2013
From protein sequence to dynamics and disorder with DynaMine E Cilia, R Pancsa, P Tompa, T Lenaerts, WF Vranken Nature communications 4 (1), 1-10, 2013	121	2013
EUROCarbDB: an open-access platform for glycoinformatics CW von der Lieth, AA Freire, D Blank, MP Campbell, A Ceroni, ... Glycobiology 21 (4), 493-502, 2011	114	2011
DRESS: a database of REfined solution NMR structures SB Nabuurs, AJ Nederveen, W Vranken, JF Doreleijers, AMJJ Bonvin, ... PROTEINS: Structure, Function, and Bioinformatics 55 (3), 483-486, 2004	113	2004
Accurate random coil chemical shifts from an analysis of loop regions in native states of proteins A De Simone, A Cavalli, STD Hsu, W Vranken, M Vendruscolo Journal of the American Chemical Society 131 (45), 16332-16333, 2009	100	2009
E‐MSD: an integrated data resource for bioinformatics A Golovin, TJ Oldfield, JG Tate, S Velankar, GJ Barton, H Boutselakis, ... Nucleic Acids Research 32 (suppl_1), D211-D216, 2004	100	2004
The three‐dimensional solution structure of Aesculus hippocastanum antimicrobial protein 1 determined by 1H nuclear magnetic resonance F Fant, WF Vranken, FAM Borremans Proteins: Structure, Function, and Bioinformatics 37 (3), 388-403, 1999	87	1999

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