Hongfang Liu
Hongfang Liu
Professor of Biomedical Informatics, Mayo Clinic
Verified email at mayo.edu
TitleCited byYear
Overview of BioCreative II gene normalization
AA Morgan, Z Lu, X Wang, AM Cohen, J Fluck, P Ruch, A Divoli, K Fundel, ...
Genome biology 9 (2), S3, 2008
3202008
CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set
WC Reinhold, M Sunshine, H Liu, S Varma, KW Kohn, J Morris, ...
Cancer research 72 (14), 3499-3511, 2012
2912012
Overview of BioCreative II gene mention recognition
L Smith, LK Tanabe, RJ nee Ando, CJ Kuo, IF Chung, CN Hsu, YS Lin, ...
Genome biology 9 (2), S2, 2008
2902008
Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the Clavicipitaceae reveals dynamics of alkaloid loci
CL Schardl, CA Young, U Hesse, SG Amyotte, K Andreeva, PJ Calie, ...
PLoS genetics 9 (2), e1003323, 2013
2472013
Gene name ambiguity of eukaryotic nomenclatures
L Chen, H Liu, C Friedman
Bioinformatics 21 (2), 248-256, 2004
1762004
UTS: An unbalanced tree search benchmark
S Olivier, J Huan, J Liu, J Prins, J Dinan, P Sadayappan, CW Tseng
International Workshop on Languages and Compilers for Parallel Computing …, 2006
1652006
Building effective defect-prediction models in practice
AG Koru, H Liu
IEEE software 22 (6), 23-29, 2005
1642005
Automatic resolution of ambiguous terms based on machine learning and conceptual relations in the UMLS
H Liu, SB Johnson, C Friedman
Journal of the American Medical Informatics Association 9 (6), 621-636, 2002
1462002
Representing information in patient reports using natural language processing and the extensible markup language
C Friedman, G Hripcsak, L Shagina, H Liu
Journal of the American Medical Informatics Association 6 (1), 76-87, 1999
1451999
Framework for a protein ontology
DA Natale, CN Arighi, WC Barker, J Blake, TC Chang, Z Hu, H Liu, ...
BMC bioinformatics 8 (9), S1, 2007
1332007
The gene normalization task in BioCreative III
Z Lu, HY Kao, CH Wei, M Huang, J Liu, CJ Kuo, CN Hsu, RTH Tsai, ...
BMC bioinformatics 12 (8), S2, 2011
1312011
BioThesaurus: a web-based thesaurus of protein and gene names
H Liu, ZZ Hu, J Zhang, C Wu
Bioinformatics 22 (1), 103-105, 2005
1252005
mRNA and microRNA expression profiles of the NCI-60 integrated with drug activities
H Liu, P D'Andrade, S Fulmer-Smentek, P Lorenzi, KW Kohn, ...
Molecular cancer therapeutics 9 (5), 1080-1091, 2010
1242010
An investigation into the functional form of the size-defect relationship for software modules
AG Koru, D Zhang, K El Emam, H Liu
IEEE Transactions on Software Engineering 35 (2), 293-304, 2008
1212008
Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality
H Xu, MC Aldrich, Q Chen, H Liu, NB Peterson, Q Dai, M Levy, A Shah, ...
Journal of the American Medical Informatics Association 22 (1), 179-191, 2014
1182014
Biological nomenclatures: a source of lexical knowledge and ambiguity
O Tuason, L Chen, H Liu, JA Blake, C Friedman
Biocomputing 2004, 238-249, 2003
1172003
Disambiguating ambiguous biomedical terms in biomedical narrative text: an unsupervised method
H Liu, YA Lussier, C Friedman
Journal of biomedical informatics 34 (4), 249-261, 2001
1092001
Clinical information extraction applications: a literature review
Y Wang, L Wang, M Rastegar-Mojarad, S Moon, F Shen, N Afzal, S Liu, ...
Journal of biomedical informatics 77, 34-49, 2018
1082018
Genome-wide depletion of replication initiation events in highly transcribed regions
MM Martin, M Ryan, RG Kim, AL Zakas, H Fu, CM Lin, WC Reinhold, ...
Genome Research 21 (11), 1822-1832, 2011
1062011
Using machine learning for concept extraction on clinical documents from multiple data sources
M Torii, K Wagholikar, H Liu
Journal of the American Medical Informatics Association 18 (5), 580-587, 2011
1022011
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Articles 1–20