| Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon A Cuscó, C Catozzi, J Viñes, A Sanchez, O Francino F1000Research 7, 2018 | 118 | 2018 |
| The microbiota of water buffalo milk during mastitis C Catozzi, A Sanchez Bonastre, O Francino, C Lecchi, E De Carlo, ... PLoS One 12 (9), e0184710, 2017 | 71 | 2017 |
| Individual signatures and environmental factors shape skin microbiota in healthy dogs A Cuscó, JM Belanger, L Gershony, A Islas-Trejo, K Levy, JF Medrano, ... Microbiome 5, 1-15, 2017 | 60 | 2017 |
| Digestive microbiota is different in pigs receiving antimicrobials or a feed additive during the nursery period C Soler, T Goossens, A Bermejo, L Migura-García, A Cusco, O Francino, ... PloS one 13 (5), e0197353, 2018 | 49 | 2018 |
| Individual signatures define canine skin microbiota composition and variability A Cuscó, A Sánchez, L Altet, L Ferrer, O Francino Frontiers in veterinary science 4, 6, 2017 | 46 | 2017 |
| Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces A Cuscó, D Pérez, J Viñes, N Fàbregas, O Francino BMC genomics 22 (1), 330, 2021 | 45 | 2021 |
| Rapid and real-time identification of fungi up to species level with long amplicon nanopore sequencing from clinical samples S D’Andreano, A Cuscó, O Francino Biology Methods and Protocols 6 (1), bpaa026, 2020 | 45 | 2020 |
| Transmission of Similar Mcr-1 Carrying Plasmids among Different Escherichia coli Lineages Isolated from Livestock and the Farmer J Viñes, A Cuscó, S Napp, J Alvarez, JL Saez-Llorente, ... Antibiotics 10 (3), 313, 2021 | 31 | 2021 |
| Using MinION™ to characterize dog skin microbiota through full-length 16S rRNA gene sequencing approach A Cuscó, J Viñes, S D’Andreano, F Riva, J Casellas, A Sánchez, ... BioRxiv, 167015, 2017 | 22 | 2017 |
| Gastrointestinal microbial population of turkey (Meleagris gallopavo) affected by hemorrhagic enteritis virus S D’Andreano, AS Bonastre, O Francino, AC Martí, C Lecchi, G Grilli, ... Poultry Science 96 (10), 3550-3558, 2017 | 21 | 2017 |
| Impact of intramammary inoculation of inactivated Lactobacillus rhamnosus and antibiotics on the milk microbiota of water buffalo with subclinical mastitis C Catozzi, A Cuscó, C Lecchi, E De Carlo, D Vecchio, A Martucciello, ... PloS one 14 (1), e0210204, 2019 | 18 | 2019 |
| Effect of an anti‐inflammatory pomegranate otic treatment on the clinical evolution and microbiota profile of dogs with otitis externa A Puigdemont, S D’Andreano, L Ramió‐Lluch, A Cuscó, O Francino, ... Veterinary Dermatology 32 (2), 158-e37, 2021 | 16 | 2021 |
| Milk microbiota profiling on water buffalo with full-length 16S rRNA using nanopore sequencing C Catozzi, F Ceciliani, C Lecchi, A Talenti, D Vecchio, E De Carlo, ... Journal of dairy science 103 (3), 2693-2700, 2020 | 15 | 2020 |
| Non-synonymous genetic variation in exonic regions of canine Toll-like receptors A Cuscó, A Sánchez, L Altet, L Ferrer, O Francino Canine Genetics and Epidemiology 1, 1-12, 2014 | 15 | 2014 |
| Dissemination of NDM-producing Klebsiella pneumoniae and Escherichia coli high-risk clones in Catalan healthcare institutions M Marí-Almirall, C Cosgaya, C Pitart, J Viñes, L Muñoz, I Campo, A Cuscó, ... Journal of Antimicrobial Chemotherapy 76 (2), 345-354, 2021 | 14 | 2021 |
| The microbiota of the surface, dermis and subcutaneous tissue of dog skin R García-Fonticoba, L Ferrer, O Francino, A Cuscó Animal microbiome 2 (1), 34, 2020 | 14 | 2020 |
| Clonal Spread and Intra- and Inter-Species Plasmid Dissemination Associated With Klebsiella pneumoniae Carbapenemase-Producing Enterobacterales During a … M Marí-Almirall, N Ferrando, MJ Fernández, C Cosgaya, J Viñes, E Rubio, ... Frontiers in microbiology 12, 781127, 2021 | 12 | 2021 |
| Endosymbionts carried by ticks feeding on dogs in Spain A Vila, A Estrada-Peña, L Altet, A Cusco, S Dandreano, O Francino, ... Ticks and tick-borne diseases 10 (4), 848-852, 2019 | 12 | 2019 |
| Whole genome sequencing and de novo assembly of Staphylococcus pseudintermedius: a pangenome approach to unravelling pathogenesis of canine pyoderma L Ferrer, R García‐Fonticoba, D Pérez, J Viñes, N Fàbregas, S Madroñero, ... Veterinary Dermatology 32 (6), 654-663, 2021 | 11 | 2021 |
| Novel canine high-quality metagenome-assembled genomes, prophages and host-associated plasmids provided by long-read metagenomics together with Hi-C proximity ligation A Cuscó, D Pérez, J Viñes, N Fàbregas, O Francino Microbial genomics 8 (3), 000802, 2022 | 9 | 2022 |
