Qin Ma
Qin Ma
Associate Professor, Ohio State University
Verified email at osu.edu - Homepage
TitleCited byYear
QUBIC: a qualitative biclustering algorithm for analyses of gene expression data
G Li, Q Ma, H Tang, AH Paterson, Y Xu
Nucleic acids research 37 (15), e101-e101, 2009
2062009
DOOR 2.0: presenting operons and their functions through dynamic and integrated views
X Mao, Q Ma, C Zhou, X Chen, H Zhang, J Yang, F Mao, W Lai, Y Xu
Nucleic acids research 42 (D1), D654-D659, 2013
1112013
Caldicellulosiruptor core and pan genomes reveal determinants for non-cellulosomal thermophilic deconstruction of plant biomass
SE Blumer-Schuette, RJ Giannone, JV Zurawski, I Ozdemir, Q Ma, Y Yin, ...
Journal of Bacteriology, 2012
912012
Comprehensive characterization of the genomic alterations in human gastric cancer
J Cui, Y Yin, Q Ma, G Wang, V Olman, Y Zhang, WC Chou, CS Hong, ...
International journal of cancer 137 (1), 86-95, 2015
372015
Genome-scale identification of cell-wall related genes in Arabidopsis based on co-expression network analysis
S Wang, Y Yin, Q Ma, X Tang, D Hao, Y Xu
BMC Plant Biology 12 (1), 138, 2012
372012
The understanding of circular RNAs as special triggers in carcinogenesis
Z Xin, Q Ma, S Ren, G Wang, F Li
Briefings in functional genomics 16 (2), 80-86, 2017
362017
Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress
CM Wilson, S Yang, M Rodriguez, Q Ma, CM Johnson, L Dice, Y Xu, ...
Biotechnology for biofuels 6 (1), 131, 2013
342013
An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale
Q Ma, B Liu, C Zhou, Y Yin, G Li, Y Xu
Bioinformatics 29 (18), 2261-2268, 2013
302013
QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data
Y Zhang, J Xie, J Yang, A Fennell, C Zhang, Q Ma
Bioinformatics 33 (3), 450-452, 2017
292017
DMINDA: an integrated web server for DNA motif identification and analyses
Q Ma, H Zhang, X Mao, C Zhou, B Liu, X Chen, Y Xu
Nucleic acids research 42 (W1), W12-W19, 2014
282014
A new framework for identifying cis-regulatory motifs in prokaryotes
G Li, B Liu, Q Ma, Y Xu
Nucleic acids research 39 (7), e42-e42, 2010
282010
DMINDA 2.0: integrated and systematic views of regulatory DNA motif identification and analyses
J Yang, X Chen, A McDermaid, Q Ma
Bioinformatics 33 (16), 2586-2588, 2017
222017
Computational analyses of transcriptomic data reveal the dynamic organization of the Escherichia coli chromosome under different conditions
Q Ma, Y Yin, MA Schell, H Zhang, G Li, Y Xu
Nucleic Acids Research, 2013
222013
Planar graphs without 5-cycles or without 6-cycles
Q Ma, JL Wu, X Yu
Discrete Mathematics 309 (10), 2998-3005, 2009
202009
Systems-level understanding of ethanol-induced stresses and adaptation in E. coli
H Cao, D Wei, Y Yang, Y Shang, G Li, Y Zhou, Q Ma, Y Xu
Scientific reports 7, 44150, 2017
142017
An algorithmic perspective of de novo cis-regulatory motif finding based on ChIP-seq data
B Liu, J Yang, Y Li, A McDermaid, Q Ma
Briefings in Bioinformatics, 2017
142017
Bacterial regulon modeling and prediction based on systematic cis regulatory motif analyses
B Liu, C Zhou, G Li, H Zhang, E Zeng, Q Liu, Q Ma
Scientific reports 6, 23030, 2016
132016
Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum
WC Chou, Q Ma, S Yang, S Cao, DM Klingeman, SD Brown, Y Xu
Nucleic acids research 43 (10), e67-e67, 2015
132015
QServer: a biclustering server for prediction and assessment of co-expressed gene clusters
F Zhou, Q Ma, G Li, Y Xu
PloS one 7 (3), e32660, 2012
122012
Integration of sequence-similarity and functional association information can overcome intrinsic problems in orthology mapping across bacterial genomes
G Li, Q Ma, X Mao, Y Yin, X Zhu, Y Xu
Nucleic acids research 39 (22), e150-e150, 2011
122011
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Articles 1–20