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Michal Jamroz
Michal Jamroz
Verified email at chem.uw.edu.pl - Homepage
Title
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Cited by
Year
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site
M Kurcinski, M Jamroz, M Blaszczyk, A Kolinski, S Kmiecik
Nucleic acids research 43 (W1), W419-W424, 2015
3802015
AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures
R Zambrano, M Jamroz, A Szczasiuk, J Pujols, S Kmiecik, S Ventura
Nucleic acids research 43 (W1), W306-W313, 2015
2282015
KnotProt: a database of proteins with knots and slipknots
M Jamroz, W Niemyska, EJ Rawdon, A Stasiak, KC Millett, P Sułkowski, ...
Nucleic acids research 43 (D1), D306-D314, 2015
2112015
CABS-flex: server for fast simulation of protein structure fluctuations
M Jamroz, A Kolinski, S Kmiecik
Nucleic acids research 41 (W1), W427-W431, 2013
1652013
CABS-fold: server for the de novo and consensus-based prediction of protein structure
M Blaszczyk, M Jamroz, S Kmiecik, A Kolinski
Nucleic acids research 41 (W1), W406-W411, 2013
1032013
Consistent view of protein fluctuations from all-atom molecular dynamics and coarse-grained dynamics with knowledge-based force-field
M Jamroz, M Orozco, A Kolinski, S Kmiecik
Journal of chemical theory and computation 9 (1), 119-125, 2013
912013
CABS-flex predictions of protein flexibility compared with NMR ensembles
M Jamroz, A Kolinski, S Kmiecik
Bioinformatics 30 (15), 2150-2154, 2014
862014
Modeling of loops in proteins: a multi-method approach
M Jamroz, A Kolinski
BMC structural biology 10, 1-9, 2010
572010
Combining structural aggregation propensity and stability predictions to redesign protein solubility
M Gil-Garcia, M Bano-Polo, N Varejao, M Jamroz, A Kuriata, ...
Molecular pharmaceutics 15 (9), 3846-3859, 2018
482018
ClusCo: clustering and comparison of protein models
M Jamroz, A Kolinski
Bmc Bioinformatics 14, 1-6, 2013
442013
Structure prediction of the second extracellular loop in G-protein-coupled receptors
S Kmiecik, M Jamroz, M Kolinski
Biophysical journal 106 (11), 2408-2416, 2014
372014
Structural features that predict real‐value fluctuations of globular proteins
M Jamroz, A Kolinski, D Kihara
Proteins: Structure, Function, and Bioinformatics 80 (5), 1425-1435, 2012
222012
Multiscale approach to protein folding dynamics
S Kmiecik, M Jamroz, A Kolinski
Multiscale Approaches to Protein Modeling: Structure Prediction, Dynamics …, 2011
192011
Coarse-grained simulations of membrane insertion and folding of small helical proteins using the CABS model
W Pulawski, M Jamroz, M Kolinski, A Kolinski, S Kmiecik
Journal of Chemical Information and Modeling 56 (11), 2207-2215, 2016
172016
Protocols for efficient simulations of long-time protein dynamics using coarse-grained CABS model
M Jamroz, A Kolinski, S Kmiecik
Protein Structure Prediction, 235-250, 2014
152014
Ensemble-based evaluation for protein structure models
M Jamroz, A Kolinski, D Kihara
Bioinformatics 32 (12), i314-i321, 2016
102016
Predicting real-valued protein residue fluctuation using FlexPred
L Peterson, M Jamroz, A Kolinski, D Kihara
Prediction of Protein Secondary Structure, 175-186, 2017
62017
Multiscale Approaches to Protein Modeling
S Kmiecik, M Jamroz, A Kolinski
Springer, 2011
52011
Multiscale Protein and Peptide Docking
M Kurcinski, M Jamroz, A Kolinski
Multiscale Approaches to Protein Modeling: Structure Prediction, Dynamics …, 2011
22011
Web server tools for modeling of protein structure, flexibility, aggregation properties and protein-peptide interactions
M Blaszczyk, M Jamroz, M Kurcinski, A Szczasiuk, A Kolinski, S Kmiecik
PROTEIN SCIENCE 24, 247-248, 2015
2015
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