Cedric Notredame
Cedric Notredame
Principal Investigator, Centre For Genomic Regulation CRG, Barcelona
Verified email at crg.eu - Homepage
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
10489*2012
T-Coffee: A novel method for fast and accurate multiple sequence alignment
C Notredame, DG Higgins, J Heringa
Journal of molecular biology 302 (1), 205-217, 2000
69922000
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ...
Genome research 22 (9), 1775-1789, 2012
33892012
Long noncoding RNAs with enhancer-like function in human cells
UA Ĝrom, T Derrien, M Beringer, K Gumireddy, A Gardini, G Bussotti, ...
Cell 143 (1), 46-58, 2010
15712010
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
11452014
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
P Di Tommaso, S Moretti, I Xenarios, M Orobitg, A Montanyola, JM Chang, ...
Nucleic acids research 39 (suppl_2), W13-W17, 2011
7272011
SAGA: sequence alignment by genetic algorithm
C Notredame, DG Higgins
Nucleic acids research 24 (8), 1515-1524, 1996
6851996
M-Coffee: combining multiple sequence alignment methods with T-Coffee
IM Wallace, O O'sullivan, DG Higgins, C Notredame
Nucleic acids research 34 (6), 1692-1699, 2006
5012006
Recent progress in multiple sequence alignment: a survey
C Notredame
Pharmacogenomics 3 (1), 131-144, 2002
4782002
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
F Armougom, S Moretti, O Poirot, S Audic, P Dumas, B Schaeli, V Keduas, ...
Nucleic acids research 34 (suppl_2), W604-W608, 2006
4332006
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis
RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, LA Blomberg, P Bouffard, ...
PLoS Biol 8 (9), e1000475, 2010
3872010
3DCoffee: combining protein sequences and structures within multiple sequence alignments
O O'Sullivan, K Suhre, C Abergel, DG Higgins, C Notredame
Journal of molecular biology 340 (2), 385-395, 2004
3742004
Bioinformatics for dummies
JM Claverie, C Notredame
John Wiley & Sons, 2006
3532006
Tcoffee@ igs: a web server for computing, evaluating and combining multiple sequence alignments
O Poirot, E O'Toole, C Notredame
Nucleic acids research 31 (13), 3503-3506, 2003
3322003
Nextflow enables reproducible computational workflows
P Di Tommaso, M Chatzou, EW Floden, PP Barja, E Palumbo, ...
Nature biotechnology 35 (4), 316-319, 2017
3312017
COFFEE: an objective function for multiple sequence alignments.
C Notredame, L Holm, DG Higgins
Bioinformatics (Oxford, England) 14 (5), 407-422, 1998
3131998
Epistasis as the primary factor in molecular evolution
MS Breen, C Kemena, PK Vlasov, C Notredame, FA Kondrashov
Nature 490 (7421), 535-538, 2012
2952012
Recent evolutions of multiple sequence alignment algorithms
C Notredame
PLoS Comput Biol 3 (8), e123, 2007
2572007
Upcoming challenges for multiple sequence alignment methods in the high-throughput era
C Kemena, C Notredame
Bioinformatics 25 (19), 2455-2465, 2009
2182009
A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3
S Dietmann, J Park, C Notredame, A Heger, M Lappe, L Holm
Nucleic acids research 29 (1), 55-57, 2001
2162001
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