Xiaotao Shen
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Metabolic reaction network-based recursive metabolite annotation for untargeted metabolomics
X Shen, R Wang, X Xiong, Y Yin, Y Cai, Z Ma, N Liu, ZJ Zhu
Nature communications 10 (1), 1516, 2019
Large-scale prediction of collision cross-section values for metabolites in ion mobility-mass spectrometry
Z Zhou, X Shen, J Tu, ZJ Zhu
Analytical chemistry 88 (22), 11084-11091, 2016
LipidCCS: prediction of collision cross-section values for lipids with high precision to support ion mobility–mass spectrometry-based lipidomics
Z Zhou, J Tu, X Xiong, X Shen, ZJ Zhu
Analytical chemistry 89 (17), 9559-9566, 2017
Metabolic dynamics and prediction of gestational age and time to delivery in pregnant women
L Liang, MLH Rasmussen, B Piening, X Shen, S Chen, H Röst, JK Snyder, ...
Cell 181 (7), 1680-1692. e15, 2020
Normalization and integration of large-scale metabolomics data using support vector regression
X Shen, X Gong, Y Cai, Y Guo, J Tu, H Li, T Zhang, J Wang, F Xue, ZJ Zhu
Metabolomics 12, 1-12, 2016
Serum metabolomics for early diagnosis of esophageal squamous cell carcinoma by UHPLC-QTOF/MS
J Wang, T Zhang, X Shen, J Liu, D Zhao, Y Sun, L Wang, Y Liu, X Gong, ...
Metabolomics 12, 1-10, 2016
LipidIMMS Analyzer: integrating multi-dimensional information to support lipid identification in ion mobility—mass spectrometry based lipidomics
Z Zhou, X Shen, X Chen, J Tu, X Xiong, ZJ Zhu
Bioinformatics 35 (4), 698-700, 2019
Predicting the pathological response to neoadjuvant chemoradiation using untargeted metabolomics in locally advanced rectal cancer
H Jia, X Shen, Y Guan, M Xu, J Tu, M Mo, L Xie, J Yuan, Z Zhang, S Cai, ...
Radiotherapy and Oncology 128 (3), 548-556, 2018
Development of a correlative strategy to discover colorectal tumor tissue derived metabolite biomarkers in plasma using untargeted metabolomics
Z Wang, B Cui, F Zhang, Y Yang, X Shen, Z Li, W Zhao, Y Zhang, K Deng, ...
Analytical chemistry 91 (3), 2401-2408, 2018
MetFlow: an interactive and integrated workflow for metabolomics data cleaning and differential metabolite discovery
X Shen, ZJ Zhu
Bioinformatics 35 (16), 2870-2872, 2019
Precision environmental health monitoring by longitudinal exposome and multi-omics profiling
P Gao, X Shen, X Zhang, C Jiang, S Zhang, X Zhou, SMSF Rose, ...
Genome Research 32 (6), 1199-1214, 2022
metID: an R package for automatable compound annotation for LC− MS-based data
X Shen, S Wu, L Liang, S Chen, K Contrepois, ZJ Zhu, M Snyder
Bioinformatics 38 (2), 568-569, 2022
State-of-the-art methods for exposure-health studies: Results from the exposome data challenge event
L Maitre, JB Guimbaud, C Warembourg, N Güil-Oumrait, PM Petrone, ...
Environment international 168, 107422, 2022
TidyMass an object-oriented reproducible analysis framework for LC–MS data
X Shen, H Yan, C Wang, P Gao, C Johnson, M Snyder
Nature Communications 13 (1), 1-12, 2022
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
S Jain, L Pei, JM Spraggins, M Angelo, JP Carson, N Gehlenborg, F Ginty, ...
Nature cell biology 25 (8), 1089-1100, 2023
Multiomic analysis reveals cell-type-specific molecular determinants of COVID-19 severity
S Zhang, J Cooper-Knock, AK Weimer, M Shi, L Kozhaya, D Unutmaz, ...
Cell systems 13 (8), 598-614. e6, 2022
Serum metabolomics analysis for the progression of esophageal squamous cell carcinoma
X Li, L Zhao, M Wei, J Lv, Y Sun, X Shen, D Zhao, F Xue, T Zhang, J Wang
Journal of Cancer 12 (11), 3190, 2021
Multi-omics microsampling for the profiling of lifestyle-associated changes in health
X Shen, R Kellogg, DJ Panyard, N Bararpour, KE Castillo, ...
Nature Biomedical Engineering, 1-19, 2023
Organism-wide, cell-type-specific secretome mapping of exercise training in mice
W Wei, NM Riley, X Lyu, X Shen, J Guo, SH Raun, M Zhao, ...
Cell Metabolism, 2023
Common and rare variant analyses combined with single-cell multiomics reveal cell-type-specific molecular mechanisms of COVID-19 severity
S Zhang, J Cooper-Knock, AK Weimer, C Harvey, TH Julian, C Wang, J Li, ...
medRxiv, 2021.06. 15.21258703, 2021
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