Karsten Hokamp
Karsten Hokamp
Bioinformatics Research Officer, Smurfit Institute of Genetics, Trinity College Dublin
Verified email at tcd.ie
Cited by
Cited by
Initial sequencing and analysis of the human genome
ES Lander, LM Linton, B Birren, C Nusbaum, MC Zody, J Baldwin, ...
Nature 409 (6822), 860-921, 2001
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
G Blanc, K Hokamp, KH Wolfe
Genome research 13 (2), 137-144, 2003
Extensive genomic duplication during early chordate evolution
A McLysaght, K Hokamp, KH Wolfe
Nature genetics 31 (2), 200-204, 2002
Modulation of the TLR-mediated inflammatory response by the endogenous human host defense peptide LL-37
N Mookherjee, KL Brown, DME Bowdish, S Doria, R Falsafi, K Hokamp, ...
The Journal of Immunology 176 (4), 2455-2464, 2006
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
C Kröger, SC Dillon, ADS Cameron, K Papenfort, SK Sivasankaran, ...
Proceedings of the National Academy of Sciences 109 (20), E1277-E1286, 2012
InnateDB: facilitating systems‐level analyses of the mammalian innate immune response
DJ Lynn, GL Winsor, C Chan, N Richard, MR Laird, A Barsky, JL Gardy, ...
Molecular systems biology 4 (1), 218, 2008
An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium
C Kröger, A Colgan, S Srikumar, K Händler, SK Sivasankaran, ...
Cell host & microbe 14 (6), 683-695, 2013
Circadian control of innate immunity in macrophages by miR-155 targeting Bmal1
AM Curtis, CT Fagundes, G Yang, EM Palsson-McDermott, P Wochal, ...
Proceedings of the National Academy of Sciences 112 (23), 7231-7236, 2015
RNA-seq brings new insights to the intra-macrophage transcriptome of Salmonella Typhimurium
S Srikumar, C Kröger, M Hébrard, A Colgan, SV Owen, SK Sivasankaran, ...
PLoS pathogens 11 (11), e1005262, 2015
Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa
CJ Loscher, K Hokamp, PF Kenna, AC Ivens, P Humphries, A Palfi, ...
Genome biology 8 (11), 1-12, 2007
The extracellular leucine-rich repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns
J Dolan, K Walshe, S Alsbury, K Hokamp, S O'Keeffe, T Okafuji, ...
BMC genomics 8 (1), 1-24, 2007
Effect of stress on viral–bacterial synergy in bovine respiratory disease: novel mechanisms to regulate inflammation
PD Hodgson, P Aich, A Manuja, K Hokamp, FM Roche, FSL Brinkman, ...
Comparative and functional genomics 6 (4), 244-250, 2005
Bovine and human cathelicidin cationic host defense peptides similarly suppress transcriptional responses to bacterial lipopolysaccharide
N Mookherjee, HL Wilson, S Doria, Y Popowych, R Falsafi, JJ Yu, YX Li, ...
Journal of leukocyte biology 80 (6), 1563-1574, 2006
Receptor‐mediated recognition of mycobacterial pathogens
KE Killick, C Ní Cheallaigh, C O'farrelly, K Hokamp, DE MacHugh, J Harris
Cellular microbiology 15 (9), 1484-1495, 2013
The complex relationship of gene duplication and essentiality
T Makino, K Hokamp, A McLysaght
Trends in genetics 25 (4), 152-155, 2009
Circadian clock protein BMAL1 regulates IL-1β in macrophages via NRF2
JO Early, D Menon, CA Wyse, MP Cervantes-Silva, Z Zaslona, RG Carroll, ...
Proceedings of the National Academy of Sciences 115 (36), E8460-E8468, 2018
Characterization of protein C receptor expression in monocytes
L Galligan, W Livingstone, Y Volkov, K Hokamp, C Murphy, M Lawler, ...
British journal of haematology 115 (2), 408-414, 2001
Compensatory evolution of gene regulation in response to stress by Escherichia coli lacking RpoS
DM Stoebel, K Hokamp, MS Last, CJ Dorman
PLoS Genet 5 (10), e1000671, 2009
Comparative transcript profiling of Candida albicans and Candida dubliniensis identifies SFL2, a C. albicans gene required for virulence in a reconstituted epithelial infection …
MJ Spiering, GP Moran, M Chauvel, DM MacCallum, J Higgins, ...
Eukaryotic cell 9 (2), 251-265, 2010
ArrayPipe: a flexible processing pipeline for microarray data
K Hokamp, FM Roche, M Acab, ME Rousseau, B Kuo, D Goode, ...
Nucleic acids research 32 (suppl_2), W457-W459, 2004
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