David W. Cleary
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Secondary bacterial infections associated with influenza pandemics
DE Morris, DW Cleary, SC Clarke
Frontiers in microbiology 8, 1041, 2017
Longitudinal profiling of the lung microbiome in the AERIS study demonstrates repeatability of bacterial and eosinophilic COPD exacerbations
D Mayhew, N Devos, C Lambert, JR Brown, SC Clarke, VL Kim, ...
Thorax 73 (5), 422-430, 2018
A prospective, observational cohort study of the seasonal dynamics of airway pathogens in the aetiology of exacerbations in COPD
TMA Wilkinson, E Aris, S Bourne, SC Clarke, M Peeters, TG Pascal, ...
Thorax 72 (10), 919-927, 2017
The rise and fall of pneumococcal serotypes carried in the PCV era
VT Devine, DW Cleary, JMC Jefferies, R Anderson, DE Morris, AC Tuck, ...
Vaccine 35 (9), 1293-1298, 2017
Impact and associations of eosinophilic inflammation in COPD: analysis of the AERIS cohort
VL Kim, NA Coombs, KJ Staples, KK Ostridge, NP Williams, SA Wootton, ...
European Respiratory Journal 50 (4), 2017
Long-term antibiotic exposure in soil is associated with changes in microbial community structure and prevalence of class 1 integrons
DW Cleary, AH Bishop, L Zhang, E Topp, EMH Wellington, WH Gaze
FEMS microbiology ecology 92 (10), fiw159, 2016
Diagnostic accuracy of loop-mediated isothermal amplification coupled to nanopore sequencing (LamPORE) for the detection of SARS-CoV-2 infection at scale in symptomatic and …
A Ptasinska, C Whalley, A Bosworth, C Poxon, C Bryer, N Machin, ...
Clinical microbiology and infection 27 (9), 1348. e1-1348. e7, 2021
Acinetobacter spp. infections in Malaysia: a review of antimicrobial resistance trends, mechanisms and epidemiology
NI A Rahman, S Ismail, AG Alattraqchi, DW Cleary, SC Clarke, CC Yeo
Frontiers in microbiology, 2479, 2017
Relationship of CT-quantified emphysema, small airways disease and bronchial wall dimensions with physiological, inflammatory and infective measures in COPD
K Ostridge, NP Williams, V Kim, S Harden, S Bourne, SC Clarke, E Aris, ...
Respiratory research 19, 1-11, 2018
Pneumococcal conjugate vaccine implementation in middle-income countries
S Tricarico, HC McNeil, DW Cleary, MG Head, V Lim, IKS Yap, CC Wie, ...
Pneumonia 9, 1-15, 2017
16S sequencing and functional analysis of the fecal microbiome during treatment of newly diagnosed pediatric inflammatory bowel disease
JJ Ashton, CM Colquhoun, DW Cleary, T Coelho, R Haggarty, I Mulder, ...
Medicine 96 (26), 2017
Impact of radiologically stratified exacerbations: insights into pneumonia aetiology in COPD
NP Williams, K Ostridge, JM Devaster, V Kim, NA Coombs, S Bourne, ...
Respiratory research 19, 1-12, 2018
Microevolution of Neisseria lactamica during nasopharyngeal colonisation induced by controlled human infection
A Pandey, DW Cleary, JR Laver, A Gorringe, AM Deasy, AP Dale, ...
Nature Communications 9 (1), 4753, 2018
Using Surface-Enhanced Raman Spectroscopy and Electrochemically Driven Melting to Discriminate Yersinia pestis from Y. pseudotuberculosis Based on Single …
E Papadopoulou, SA Goodchild, DW Cleary, SA Weller, N Gale, ...
Analytical chemistry 87 (3), 1605-1612, 2015
Pre-vaccine serotype composition within a lineage signposts its serotype replacement–a carriage study over 7 years following pneumococcal conjugate vaccine use in the UK
RA Gladstone, V Devine, J Jones, D Cleary, JM Jefferies, SD Bentley, ...
Microbial Genomics 3 (6), 2017
The adhesins of non-typeable Haemophilus influenzae
KL Osman, JM Jefferies, CH Woelk, DW Cleary, SC Clarke
Expert review of anti-infective therapy 16 (3), 187-196, 2018
Biocide susceptibilities and biofilm-forming capacities of Acinetobacter baumannii clinical isolates from Malaysia
MHN A'shimi, AG Alattraqchi, FM Rani, NIA Rahman, S Ismail, ...
The Journal of Infection in Developing Countries 13 (07), 626-633, 2019
Pneumococcal vaccine impacts on the population genomics of non-typeable Haemophilus influenzae
D Cleary, V Devine, D Morris, K Osman, S Clarke
Microbial Genomics 4, 2018
The nasopharyngeal microbiome
DW Cleary, SC Clarke
Emerging Topics in Life Sciences 1 (4), 297-312, 2017
Patients with Chronic Obstructive Pulmonary Disease harbour a variation of Haemophilus species
KL Osman, JMC Jefferies, CH Woelk, N Devos, TG Pascal, MC Mortier, ...
Scientific Reports 8 (1), 14734, 2018
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