Sagar Khare
Sagar Khare
Assistant Professor of Chemistry and Chemical Biology, Rutgers University
Verified email at rutgers.edu - Homepage
Title
Cited by
Cited by
Year
Quantitative reactivity profiling predicts functional cysteines in proteomes
E Weerapana, C Wang, GM Simon, F Richter, S Khare, MBD Dillon, ...
Nature 468 (7325), 790-795, 2010
11242010
Computational design of ligand-binding proteins with high affinity and selectivity
CE Tinberg, SD Khare, J Dou, L Doyle, JW Nelson, A Schena, ...
Nature 501 (7466), 212-216, 2013
3692013
RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite
SJ Fleishman, A Leaver-Fay, JE Corn, EM Strauch, SD Khare, N Koga, ...
PloS one 6 (6), e20161, 2011
3512011
De novo enzyme design using Rosetta3
F Richter, A Leaver-Fay, SD Khare, S Bjelic, D Baker
PloS one 6 (5), e19230, 2011
2912011
Structure prediction for CASP7 targets using extensive all‐atom refinement with Rosetta@ home
R Das, B Qian, S Raman, R Vernon, J Thompson, P Bradley, S Khare, ...
Proteins: Structure, Function, and Bioinformatics 69 (S8), 118-128, 2007
2552007
Molecular dynamics simulation of amyloid β dimer formation
B Urbanc, L Cruz, F Ding, D Sammond, S Khare, SV Buldyrev, HE Stanley, ...
Biophysical journal 87 (4), 2310-2321, 2004
2312004
Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis
SD Khare, Y Kipnis, R Takeuchi, Y Ashani, M Goldsmith, Y Song, ...
Nature chemical biology 8 (3), 294-300, 2012
2282012
The rate and equilibrium constants for a multistep reaction sequence for the aggregation of superoxide dismutase in amyotrophic lateral sclerosis
SD Khare, M Caplow, NV Dokholyan
Proceedings of the National Academy of Sciences 101 (42), 15094-15099, 2004
1702004
Computational design of catalytic dyads and oxyanion holes for ester hydrolysis
F Richter, R Blomberg, SD Khare, G Kiss, AP Kuzin, AJT Smith, J Gallaher, ...
Journal of the American Chemical Society 134 (39), 16197-16206, 2012
1372012
Molecular origin of polyglutamine aggregation in neurodegenerative diseases
SD Khare, F Ding, KN Gwanmesia, NV Dokholyan
PLoS computational biology 1 (3), e30, 2005
1182005
Computational design of an unnatural amino acid dependent metalloprotein with atomic level accuracy
JH Mills, SD Khare, JM Bolduc, F Forouhar, VK Mulligan, S Lew, ...
Journal of the American Chemical Society 135 (36), 13393-13399, 2013
1022013
Common dynamical signatures of familial amyotrophic lateral sclerosis-associated structurally diverse Cu, Zn superoxide dismutase mutants
SD Khare, NV Dokholyan
Proceedings of the National Academy of Sciences 103 (9), 3147-3152, 2006
1022006
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
872020
FireProt: energy-and evolution-based computational design of thermostable multiple-point mutants
D Bednar, K Beerens, E Sebestova, J Bendl, S Khare, R Chaloupkova, ...
PLoS computational biology 11 (11), e1004556, 2015
872015
Can contact potentials reliably predict stability of proteins?
J Khatun, SD Khare, NV Dokholyan
Journal of molecular biology 336 (5), 1223-1238, 2004
862004
Engineering V-type nerve agents detoxifying enzymes using computationally focused libraries
I Cherny, P Greisen Jr, Y Ashani, SD Khare, G Oberdorfer, H Leader, ...
ACS chemical biology 8 (11), 2394-2403, 2013
852013
New insights into FAK signaling and localization based on detection of a FAT domain folding intermediate
RDS Dixon, Y Chen, F Ding, SD Khare, KC Prutzman, MD Schaller, ...
Structure 12 (12), 2161-2171, 2004
752004
Folding of Cu, Zn superoxide dismutase and familial amyotrophic lateral sclerosis
SD Khare, F Ding, NV Dokholyan
Journal of molecular biology 334 (3), 515-525, 2003
752003
FALS mutations in Cu, Zn superoxide dismutase destabilize the dimer and increase dimer dissociation propensity: a large-scale thermodynamic analysis
SD Khare, M Caplow, NV Dokholyan
Amyloid 13 (4), 226-235, 2006
622006
Restricted sidechain plasticity in the structures of native proteins and complexes
SJ Fleishman, SD Khare, N Koga, D Baker
Protein Science 20 (4), 753-757, 2011
542011
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Articles 1–20