Paolo Cazzaniga
Paolo Cazzaniga
Assistant Professor, University of Bergamo
Verified email at unibg.it - Homepage
TitleCited byYear
Modelling metapopulations with stochastic membrane systems
D Besozzi, P Cazzaniga, D Pescini, G Mauri
Biosystems 91 (3), 499-514, 2008
652008
Tau leaping stochastic simulation method in p systems
P Cazzaniga, D Pescini, D Besozzi, G Mauri
International Workshop on Membrane Computing, 298-313, 2006
502006
A GPU-based multi-swarm PSO method for parameter estimation in stochastic biological systems exploiting discrete-time target series
MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini
European Conference on Evolutionary Computation, Machine Learning and Data …, 2012
492012
Graphics processing units in bioinformatics, computational biology and systems biology
MS Nobile, P Cazzaniga, A Tangherloni, D Besozzi
Briefings in bioinformatics 18 (5), 870-885, 2016
482016
Modeling and stochastic simulation of the Ras/cAMP/PKA pathway in the yeast Saccharomyces cerevisiae evidences a key regulatory function for intracellular guanine nucleotides pools
P Cazzaniga, D Pescini, D Besozzi, G Mauri, S Colombo, E Martegani
Journal of biotechnology 133 (3), 377-385, 2008
482008
A comparison of genetic algorithms and particle swarm optimization for parameter estimation in stochastic biochemical systems
D Besozzi, P Cazzaniga, G Mauri, D Pescini, L Vanneschi
European Conference on Evolutionary Computation, Machine Learning and Data …, 2009
402009
GPU-accelerated simulations of mass-action kinetics models with cupSODA
MS Nobile, P Cazzaniga, D Besozzi, G Mauri
The Journal of Supercomputing 69 (1), 17-24, 2014
382014
Fuzzy Self-Tuning PSO: A settings-free algorithm for global optimization
MS Nobile, P Cazzaniga, D Besozzi, R Colombo, G Mauri, G Pasi
Swarm and evolutionary computation 39, 70-85, 2018
362018
Computational strategies for a system-level understanding of metabolism
P Cazzaniga, C Damiani, D Besozzi, R Colombo, MS Nobile, D Gaglio, ...
Metabolites 4 (4), 1034-1087, 2014
362014
cuTauLeaping: A GPU-powered tau-leaping stochastic simulator for massive parallel analyses of biological systems
MS Nobile, P Cazzaniga, D Besozzi, D Pescini, G Mauri
PLoS One 9 (3), e91963, 2014
292014
The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae
D Besozzi, P Cazzaniga, D Pescini, G Mauri, S Colombo, E Martegani
EURASIP Journal on Bioinformatics and Systems Biology 2012 (1), 10, 2012
292012
Simulation of the Ras/cAMP/PKA pathway in budding yeast highlights the establishment of stable oscillatory states
D Pescini, P Cazzaniga, D Besozzi, G Mauri, L Amigoni, S Colombo, ...
Biotechnology advances 30 (1), 99-107, 2012
252012
The impact of particles initialization in PSO: parameter estimation as a case in point
P Cazzaniga, MS Nobile, D Besozzi
2015 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2015
232015
Stochastic approaches in P systems for simulating biological systems
P Cazzaniga, D Pescini, FJ Romero Campero, D Besozzi, G Mauri
Proceedings of the Fourth Brainstorming Week on Membrane Computing, Vol. I …, 2006
222006
Proactive particles in swarm optimization: a self-tuning algorithm based on fuzzy logic
MS Nobile, G Pasi, P Cazzaniga, D Besozzi, R Colombo, G Mauri
2015 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE), 1-8, 2015
212015
Seasonal variance in P system models for metapopulations
D Besozzi, P Cazzaniga, D Pescini, G Mauri
Progress in Natural Science 17 (4), 392-400, 2007
202007
Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization.
MS Nobile, D Besozzi, P Cazzaniga, D Pescini, G Mauri
Evolutionary Computation (CEC), 2013 IEEE Congress on, 1594-1601, 2013
182013
Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization
MS Nobile, D Besozzi, P Cazzaniga, D Pescini, G Mauri
2013 IEEE Congress on Evolutionary Computation, 1594-1601, 2013
182013
cupSODA: a CUDA-powered simulator of mass-action kinetics
MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini
International Conference on Parallel Computing Technologies, 344-357, 2013
172013
Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs
MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini
Proceedings of the 14th annual conference companion on Genetic and …, 2012
162012
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