Minh Duc Cao
Minh Duc Cao
Principal Machine Learning Scientist at Gritstone Oncology
Verified email at gritstone.com
Title
Cited by
Cited by
Year
A simple statistical algorithm for biological sequence compression
MD Cao, TI Dix, L Allison, C Mears
Data Compression Conference, 2007. DCC'07, 43-52, 2007
2272007
Scaffolding and completing genome assemblies in real-time with nanopore sequencing
MD Cao, SH Nguyen, D Ganesamoorthy, AG Elliott, MA Cooper, ...
Nature communications 8 (1), 1-10, 2017
1032017
Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning
H Teng, MD Cao, MB Hall, T Duarte, S Wang, LJM Coin
GigaScience 7 (5), giy037, 2018
892018
Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION TM sequencing
LJMC Minh Duc Cao, Devika Ganesamoorthy, Alysha G Elliott, Huihui Zhang ...
GigaScience 5 (1), 26, 2016
75*2016
Inferring short tandem repeat variation from paired-end short reads
MD Cao, E Tasker, K Willadsen, M Imelfort, S Vishwanathan, ...
Nucleic acids research 42 (3), e16-e16, 2014
572014
Combining contents and citations for scientific document classification
M Cao, X Gao
AI 2005: Advances in artificial intelligence, 143-152, 2005
412005
Multifactorial chromosomal variants regulate polymyxin resistance in extensively drug-resistant Klebsiella pneumoniae
ME Pitt, AG Elliott, MD Cao, D Ganesamoorthy, I Karaiskos, ...
Microbial genomics 4 (3), 2018
382018
Realtime analysis and visualization of MinION sequencing data with npReader
MD Cao, D Ganesamoorthy, MA Cooper, LJM Coin
Bioinformatics 32 (5), 764-766, 2016
252016
Sequencing technologies and tools for short tandem repeat variation detection
MD Cao, S Balasubramanian, M Bodén
Briefings in bioinformatics 16 (2), 193-204, 2015
252015
Complete Genome Sequence of Klebsiella quasipneumoniae subsp. similipneumoniae Strain ATCC 700603
AG Elliott, D Ganesamoorthy, L Coin, MA Cooper, MD Cao
Genome announcements 4 (3), e00438-16, 2016
242016
npInv: accurate detection and genotyping of inversions using long read sub-alignment
H Shao, D Ganesamoorthy, T Duarte, MD Cao, CJ Hoggart, LJM Coin
BMC bioinformatics 19 (1), 1-13, 2018
212018
Software tools and algorithms for biological systems
H Arabnia, QN Tran
Springer, 2011
212011
A genome alignment algorithm based on compression
M Cao, T Dix, L Allison
BMC bioinformatics 11 (1), 599, 2010
202010
Computing substitution matrices for genomic comparative analysis
M Cao, T Dix, L Allison
Advances in Knowledge Discovery and Data Mining, 647-655, 2009
112009
Octapeptin C4 and polymyxin resistance occur via distinct pathways in an epidemic XDR Klebsiella pneumoniae ST258 isolate
ME Pitt, MD Cao, MS Butler, S Ramu, D Ganesamoorthy, MAT Blaskovich, ...
Journal of Antimicrobial Chemotherapy 74 (3), 582-593, 2019
82019
Experimental evaluation of a lexicon-and corpus-based ensemble for multi-way sentiment analysis
MD Cao, I Zukerman
Proceedings of the Australasian Language Technology Association Workshop …, 2012
82012
Simulating the dynamics of targeted capture sequencing with CapSim
MD Cao, D Ganesamoorthy, C Zhou, LJM Coin
Bioinformatics 34 (5), 873-874, 2018
72018
Statistical enrichment of epigenetic states around triplet repeats that can undergo expansions
A Essebier, P Vera Wolf, MD Cao, BJ Carroll, S Balasubramanian, ...
Frontiers in neuroscience 10, 92, 2016
72016
Repeat-encoded poly-Q tracts show statistical commonalities across species
K Willadsen, MD Cao, J Wiles, S Balasubramanian, M Bodén
BMC genomics 14 (1), 1-10, 2013
62013
A Biological Compression Model and its Applications
MD Cao, TI Dix, L Allison
Software Tools and Algorithms for Biological Systems, 657-666, 2011
62011
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Articles 1–20