Alexander Ratushny
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Pan-viral specificity of IFN-induced genes reveals new roles for cGAS in innate immunity
JW Schoggins, DA MacDuff, N Imanaka, MD Gainey, B Shrestha, ...
Nature 505 (7485), 691-695, 2014
Human SRMAtlas: a resource of targeted assays to quantify the complete human proteome
U Kusebauch, DS Campbell, EW Deutsch, CS Chu, DA Spicer, ...
Cell 166 (3), 766-778, 2016
A FOXO3–IRF7 gene regulatory circuit limits inflammatory sequelae of antiviral responses
V Litvak, AV Ratushny, AE Lampano, F Schmitz, AC Huang, A Raman, ...
Nature 490 (7420), 421-425, 2012
NUP-1 Is a large coiled-coil nucleoskeletal protein in trypanosomes with lamin-like functions
KN DuBois, S Alsford, JM Holden, J Buisson, M Swiderski, JM Bart, ...
PLoS Biol 10 (3), e1001287, 2012
GeneNet in 2005
EA Ananko, NL Podkolodny, IL Stepanenko, OA Podkolodnaya, ...
Nucleic acids research 33 (suppl_1), D425-D427, 2005
Generalized Hill function method for modeling molecular processes
V Likhoshvai, A Ratushny
Journal of bioinformatics and computational biology 5 (02b), 521-531, 2007
Role of the histone variant H2A. Z/Htz1p in TBP recruitment, chromatin dynamics, and regulated expression of oleate-responsive genes
Y Wan, RA Saleem, AV Ratushny, O Roda, JJ Smith, CH Lin, JH Chiang, ...
Molecular and cellular biology 29 (9), 2346-2358, 2009
290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology
BJ Tully, R Sachdeva, ED Graham, JF Heidelberg
PeerJ 5, e3558, 2017
Systems cell biology
FD Mast, AV Ratushny, JD Aitchison
Journal of Cell Biology 206 (6), 695-706, 2014
Integrated phosphoproteomics analysis of a signaling network governing nutrient response and peroxisome induction
RA Saleem, RS Rogers, AV Ratushny, DJ Dilworth, PT Shannon, ...
Molecular & Cellular Proteomics 9 (9), 2076-2088, 2010
Gene regulation and metabolism: postgenomic computational approaches
J Collado-Vides, R Hofestädt
MIT Press, 2004
Control of transcriptional variability by overlapping feed-forward regulatory motifs
AV Ratushny, SA Ramsey, O Roda, Y Wan, JJ Smith, JD Aitchison
Biophysical journal 95 (8), 3715-3723, 2008
GeneNet database: description and modeling of gene networks
NA Kolchanov, EA Nedosekina, EA Ananko, VA Likhoshvai, ...
In silico biology 2 (2), 97-110, 2002
Molecular mechanisms of system responses to novel stimuli are predictable from public data
SA Danziger, AV Ratushny, JJ Smith, RA Saleem, Y Wan, CE Arens, ...
Nucleic acids research 42 (3), 1442-1460, 2014
Metallochaperones regulate intracellular copper levels
WL Pang, A Kaur, AV Ratushny, A Cvetkovic, S Kumar, M Pan, AP Arkin, ...
PLoS Comput Biol 9 (1), e1002880, 2013
A generalized chemical-kinetic method for modeling gene networks
VA Likhoshvaĭ, M IuG, AV Ratushnyĭ, EA Anan'ko, EV Ignat'eva, ...
Molekuliarnaia biologiia 35 (6), 1072-1079, 2001
Asymmetric positive feedback loops reliably control biological responses
AV Ratushny, RA Saleem, K Sitko, SA Ramsey, JD Aitchison
Molecular systems biology 8 (1), 577, 2012
Mathematical model for suppression of subgenomic hepatitis C virus RNA replication in cell culture
EL Mishchenko, KD Bezmaternykh, VA Likhoshvai, AV Ratushny, ...
Journal of bioinformatics and computational biology 5 (02b), 593-609, 2007
MAMMOTh: A new database for curated mathematical models of biomolecular systems.
F Kazantsev, I Akberdin, S Lashin, N Ree, V Timonov, A Ratushny, ...
J Bioinform Comput Biol, 2017
Mathematical and computer modeling of genetic networks
VP Golubyatnikov, VA Likhoshvai, SI Fadeev, G Matushkin Yu, ...
Proc. International Conference Human&Computers-2003. University of Aizu …, 2003
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Articles 1–20