Arjun Raj
Arjun Raj
Assistant Professor of Bioengineering, University of Pennsylvania
Verified email at seas.upenn.edu - Homepage
TitleCited byYear
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
AM Khalil, M Guttman, M Huarte, M Garber, A Raj, DR Morales, K Thomas, ...
Proceedings of the National Academy of Sciences 106 (28), 11667-11672, 2009
23072009
Nature, nurture, or chance: stochastic gene expression and its consequences
A Raj, A van Oudenaarden
Cell 135 (2), 216-226, 2008
17792008
Stochastic mRNA synthesis in mammalian cells
A Raj, CS Peskin, D Tranchina, DY Vargas, S Tyagi
PLoS biology 4 (10), e309, 2006
13032006
Imaging individual mRNA molecules using multiple singly labeled probes
A Raj, P Van Den Bogaard, SA Rifkin, A Van Oudenaarden, S Tyagi
Nature methods 5 (10), 877, 2008
11732008
Noise in gene expression determines cell fate in Bacillus subtilis
H Maamar, A Raj, D Dubnau
Science 317 (5837), 526, 2007
5862007
Control of somatic tissue differentiation by the long non-coding RNA TINCR
M Kretz, Z Siprashvili, C Chu, DE Webster, A Zehnder, K Qu, CS Lee, ...
Nature 493 (7431), 231, 2013
5412013
Variability in gene expression underlies incomplete penetrance
A Raj, SA Rifkin, E Andersen, A Van Oudenaarden
Nature 463 (7283), 913, 2010
5272010
Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre
E Hacisuleyman, LA Goff, C Trapnell, A Williams, J Henao-Mejia, L Sun, ...
Nature structural & molecular biology 21 (2), 198, 2014
3412014
Single-molecule approaches to stochastic gene expression
A Raj, A van Oudenaarden
Annual review of biophysics 38, 255-270, 2009
2942009
LincRNA-p21 activates p21 in cis to promote Polycomb target gene expression and to enforce the G1/S checkpoint
N Dimitrova, JR Zamudio, RM Jong, D Soukup, R Resnick, K Sarma, ...
Molecular cell 54 (5), 777-790, 2014
2632014
Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution
MN Cabili, MC Dunagin, PD McClanahan, A Biaesch, O Padovan-Merhar, ...
Genome biology 16 (1), 20, 2015
2522015
Mechanism of mRNA transport in the nucleus
DY Vargas, A Raj, SAE Marras, FR Kramer, S Tyagi
Proceedings of the National Academy of Sciences 102 (47), 17008-17013, 2005
2302005
Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms
O Padovan-Merhar, GP Nair, AG Biaesch, A Mayer, S Scarfone, SW Foley, ...
Molecular cell 58 (2), 339-352, 2015
2032015
Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance
SM Shaffer, MC Dunagin, SR Torborg, EA Torre, B Emert, C Krepler, ...
Nature 546 (7658), 431, 2017
1992017
Detection of individual endogenous RNA transcripts in situ using multiple singly labeled probes
A Raj, S Tyagi
Methods in enzymology 472, 365-386, 2010
1332010
Single-chromosome transcriptional profiling reveals chromosomal gene expression regulation
MJ Levesque, A Raj
Nature methods 10 (3), 246, 2013
1162013
Nanoscale imaging of RNA with expansion microscopy
F Chen, AT Wassie, AJ Cote, A Sinha, S Alon, S Asano, ER Daugharthy, ...
Nature methods 13 (8), 679, 2016
1112016
Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development
VR Paralkar, T Mishra, J Luan, Y Yao, AV Kossenkov, SM Anderson, ...
Blood 123 (12), 1927-1937, 2014
1072014
Global analysis of RNA secondary structure in two metazoans
F Li, Q Zheng, P Ryvkin, I Dragomir, Y Desai, S Aiyer, O Valladares, ...
Cell reports 1 (1), 69-82, 2012
1072012
linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis
H Maamar, MN Cabili, J Rinn, A Raj
Genes & development 27 (11), 1260-1271, 2013
1022013
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Articles 1–20