Carlos Xavier Hernández
Carlos Xavier Hernández
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Title
Cited by
Cited by
Year
MDTraj: a modern, open library for the analysis of molecular dynamics trajectories
RT McGibbon, KA Beauchamp, MP Harrigan, C Klein, JM Swails, ...
Biophysical Journal 109, 1528-1532, 2015
8772015
Markov state models provide insights into dynamic modulation of protein function
D Shukla, CX Hernández, JK Weber, VS Pande
Accounts of chemical research 48 (2), 414-422, 2015
1982015
MSMBuilder: statistical models for biomolecular dynamics
MP Harrigan, MM Sultan, CX Hernández, BE Husic, P Eastman, ...
Biophysical journal 112 (1), 10-15, 2017
1732017
Variational encoding of complex dynamics
CX Hernández, HK Wayment-Steele, MM Sultan, BE Husic, VS Pande
Physical Review E 97 (6), 062412, 2018
1012018
Osprey: Hyperparameter Optimization for Machine Learning
RT McGibbon, CX Hernández, MP Harrigan, S Kearnes, MM Sultan, ...
The Journal of Open Source Software 1, 2016
352016
Using Deep Learning for Segmentation and Counting within Microscopy Data
CX Hernández, MM Sultan, VS Pande
arXiv preprint arXiv:1802.10548, 2018
212018
MSMExplorer: Data Visualizations for Biomolecular Dynamics
CX Hernández, MP Harrigan, MM Sultan, VS Pande
The Journal of Open Source Software 2 (12), 2017
132017
ParmEd
J Swails, C Hernandez, DL Mobley, H Nguyen, LP Wang, P Janowski
URL: https://github. com/ParmEd/ParmEd, 2010
132010
Structure‐based network analysis of an evolved g‐protein coupled receptor homodimer interface
SE Nichols, CX Hernández, Y Wang, JA McCammon
Protein Science, 2013
102013
MDEntropy: information-theoretic analyses for molecular dynamics
CX Hernández, VS Pande
Journal of Open Source Software 2 (19), 427, 2017
82017
Kinetic Machine Learning Unravels Ligand-Directed Conformational Change of μ Opioid Receptor
EN Feinberg, AB Farimani, CX Hernández, VS Pande
bioRxiv, 2017
62017
Modelling intrinsically disordered protein dynamics as networks of transient secondary structure
HK Wayment-Steele, CX Hernández, VS Pande
bioRxiv, 377564, 2018
32018
Understanding the origins of a pandemic virus
CX Hernández, J Chan, H Khiabanian, R Rabadan
arXiv preprint arXiv:1104.4568, 2011
32011
Towards a Deeper Understanding of Molecular Mechanics
CX Hernández
Stanford University, 2018
2018
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Articles 1–14