Raheleh Salari
Raheleh Salari
Natera Inc
Verified email at natera.com
TitleCited byYear
Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution
C Abbosh, NJ Birkbak, GA Wilson, M Jamal-Hanjani, T Constantin, ...
Nature 545 (7655), 446-451, 2017
4972017
Mutations in early follicular lymphoma progenitors are associated with suppressed antigen presentation
MR Green, S Kihira, CL Liu, RV Nair, R Salari, AJ Gentles, J Irish, H Stehr, ...
Proceedings of the National Academy of Sciences 112 (10), E1116-E1125, 2015
1622015
Detection of ubiquitous and heterogeneous mutations in cell-free DNA from patients with early-stage non-small-cell lung cancer
M Jamal-Hanjani, GA Wilson, S Horswell, R Mitter, O Sakarya, ...
Annals of Oncology 27 (5), 862-867, 2016
1172016
Fast and scalable inference of multi-sample cancer lineages
V Popic, R Salari, I Hajirasouliha, D Kashef-Haghighi, RB West, ...
Genome biology 16 (1), 91, 2015
1132015
A partition function algorithm for interacting nucleic acid strands
H Chitsaz, R Salari, SC Sahinalp, R Backofen
Bioinformatics 25 (12), i365-i373, 2009
1072009
Genome evolution during progression to breast cancer
DE Newburger, D Kashef-Haghighi, Z Weng, R Salari, RT Sweeney, ...
Genome research 23 (7), 1097-1108, 2013
852013
Inferring cancer subnetwork markers using density-constrained biclustering
P Dao, R Colak, R Salari, F Moser, E Davicioni, A Schönhuth, M Ester
Bioinformatics 26 (18), i625-i631, 2010
612010
Sensitive measurement of single-nucleotide polymorphism-induced changes of RNA conformation: application to disease studies
R Salari, C Kimchi-Sarfaty, MM Gottesman, TM Przytycka
Nucleic acids research 41 (1), 44-53, 2013
522013
Fast prediction of RNA-RNA interaction
R Salari, R Backofen, SC Sahinalp
Algorithms for molecular Biology 5 (1), 5, 2010
522010
Characterization of coding synonymous and non-synonymous variants in ADAMTS13 using ex vivo and in silico approaches
NC Edwards, ZA Hing, A Perry, A Blaisdell, DB Kopelman, R Fathke, ...
PLoS One 7 (6), e38864, 2012
492012
Time and space efficient RNA-RNA interaction prediction via sparse folding
R Salari, M Möhl, S Will, SC Sahinalp, R Backofen
Annual International Conference on Research in Computational Molecular …, 2010
452010
Protein-protein interaction network evaluation for identifying potential drug targets
F Hormozdiari, R Salari, V Bafna, SC Sahinalp
Journal of Computational Biology 17 (5), 669-684, 2010
362010
Analysis of plasma cell-free DNA by ultradeep sequencing in patients with stages I to III colorectal cancer
T Reinert, TV Henriksen, E Christensen, S Sharma, R Salari, H Sethi, ...
JAMA oncology 5 (8), 1124-1131, 2019
342019
Sparsification of RNA structure prediction including pseudoknots
M Möhl, R Salari, S Will, R Backofen, SC Sahinalp
Algorithms for Molecular Biology 5 (1), 39, 2010
272010
Early detection of metastatic relapse and monitoring of therapeutic efficacy by ultra-deep sequencing of plasma cell-free DNA in patients with urothelial bladder carcinoma
E Christensen, K Birkenkamp-Demtröder, H Sethi, S Shchegrova, R Salari, ...
Journal of Clinical Oncology 37 (18), 1547-1557, 2019
262019
The effect of insertions and deletions on wirings in protein-protein interaction networks: a large-scale study
F Hormozdiari, R Salari, M Hsing, A Schönhuth, SK Chan, SC Sahinalp, ...
Journal of Computational Biology 16 (2), 159-167, 2009
262009
Module Cover–A new approach to genotype-phenotype studies
YA Kim, R Salari, S Wuchty, TM Przytycka
Biocomputing 2013, 135-146, 2013
252013
Personalized detection of circulating tumor DNA antedates breast cancer metastatic recurrence
RC Coombes, K Page, R Salari, RK Hastings, A Armstrong, S Ahmed, ...
Clinical Cancer Research 25 (14), 4255-4263, 2019
242019
Teasing apart translational and transcriptional components of stochastic variations in eukaryotic gene expression
R Salari, D Wojtowicz, J Zheng, D Levens, Y Pilpel, TM Przytycka
PLOS computational biology 8 (8), 2012
222012
Inference of tumor phylogenies with improved somatic mutation discovery
R Salari, SS Saleh, D Kashef-Haghighi, D Khavari, DE Newburger, ...
Journal of Computational Biology 20 (11), 933-944, 2013
202013
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