Jan Funke
Jan Funke
HHMI Janelia Research Campus
Verified email at - Homepage
Cited by
Cited by
Large Scale Image Segmentation with Structured Loss based Deep Learning for Connectome Reconstruction
J Funke, FD Tschopp, W Grisaitis, A Sheridan, C Singh, S Saalfeld, ...
arXiv preprint arXiv:1709.02974, 2017
Reconstruction of motor control circuits in adult Drosophila using automated transmission electron microscopy
JS Phelps, DGC Hildebrand, BJ Graham, AT Kuan, LA Thomas, ...
Cell 184 (3), 759-774. e18, 2021
Whole-cell organelle segmentation in volume electron microscopy
L Heinrich, D Bennett, D Ackerman, W Park, J Bogovic, N Eckstein, ...
Nature 599 (7883), 141-146, 2021
Dense neuronal reconstruction through X-ray holographic nano-tomography
AT Kuan
Biophysical Journal 118 (3), 290a, 2020
Automatic detection of synaptic partners in a whole-brain Drosophila electron microscopy data set
J Buhmann, A Sheridan, C Malin-Mayor, P Schlegel, S Gerhard, ...
Nature methods 18 (7), 771-774, 2021
Efficient automatic 3D-reconstruction of branching neurons from EM data
J Funke, B Andres, FA Hamprecht, A Cardona, M Cook
2012 IEEE Conference on Computer Vision and Pattern Recognition, 1004-1011, 2012
Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain
L Heinrich, J Funke, C Pape, J Nunez-Iglesias, S Saalfeld
Medical Image Computing and Computer Assisted Intervention–MICCAI 2018: 21st …, 2018
Neurotransmitter Classification from Electron Microscopy Images at Synaptic Sites in Drosophila Melanogaster
N Eckstein, AS Bates, A Champion, M Du, Y Yin, P Schlegel, AKY Lu, ...
BioRxiv, 2020.06. 12.148775, 2020
Accurate and linear time pose estimation from points and lines
A Vakhitov, J Funke, F Moreno-Noguer
European Conference on Computer Vision, 583-599, 2016
Efficient convolutional neural networks for pixelwise classification on heterogeneous hardware systems
F Tschopp, JNP Martel, SC Turaga, M Cook, J Funke
ISBI, 1225-1228, 2016
Optimal Joint Segmentation and Tracking of Escherichia Coli in the Mother Machine
F Jug, T Pietzsch, D Kainmüller, J Funke, M Kaiser, E van Nimwegen, ...
Bayesian and graphical Models for Biomedical Imaging: First International …, 2014
Segmented anisotropic ssTEM dataset of neural tissue
S Gerhard, J Funke, J Martel, A Cardona, R Fetter
figshare, 0-0, 2013
Local shape descriptors for neuron segmentation
A Sheridan, TM Nguyen, D Deb, WCA Lee, S Saalfeld, SC Turaga, ...
Nature Methods 20 (2), 295-303, 2023
Neuronal wiring diagram of an adult brain
S Dorkenwald, A Matsliah, AR Sterling, P Schlegel, SC Yu, CE McKellar, ...
bioRxiv, 2023
Learning to segment: training hierarchical segmentation under a topological loss
J Funke, FA Hamprecht, C Zhang
Medical Image Computing and Computer-Assisted Intervention–MICCAI 2015: 18th …, 2015
Who is talking to whom: synaptic partner detection in anisotropic volumes of insect brain
A Kreshuk, J Funke, A Cardona, FA Hamprecht
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2015 …, 2015
A framework for evaluating visual SLAM
J Funke, T Pietzsch
Proceedings of the British Machine Vision Conference (BMVC) 6, 2009
Automatic whole cell organelle segmentation in volumetric electron microscopy
L Heinrich, D Bennett, D Ackerman, W Park, J Bogovic, N Eckstein, ...
bioRxiv, 2020.11. 14.382143, 2020
Neural network organization for courtship-song feature detection in Drosophila
CA Baker, C McKellar, R Pang, A Nern, S Dorkenwald, DA Pacheco, ...
Current Biology 32 (15), 3317-3333. e7, 2022
Candidate sampling for neuron reconstruction from anisotropic electron microscopy volumes
J Funke, JNP Martel, S Gerhard, B Andres, DC Cireşan, A Giusti, ...
Medical Image Computing and Computer-Assisted Intervention–MICCAI 2014: 17th …, 2014
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