| Single-cell transcriptomic atlas of the human endometrium during the menstrual cycle W Wang, F Vilella, P Alama, I Moreno, M Mignardi, A Isakova, W Pan, ... Nature Medicine 26 (10), 1644-1653, 2020 | 327 | 2020 |
| Single-cell transcriptomes and whole-brain projections of serotonin neurons in the mouse dorsal and median raphe nuclei J Ren, A Isakova, D Friedmann, J Zeng, SM Grutzner, A Pun, GQ Zhao, ... Elife 8, e49424, 2019 | 224 | 2019 |
| Systematic dissection of genomic features determining transcription factor binding and enhancer function SR Grossman, X Zhang, L Wang, J Engreitz, A Melnikov, P Rogov, ... Proceedings of the National Academy of Sciences 114 (7), E1291-E1300, 2017 | 181 | 2017 |
| Topology and dynamics of the zebrafish segmentation clock core circuit C Schröter, S Ares, LG Morelli, A Isakova, K Hens, D Soroldoni, ... PLoS biology 10 (7), e1001364, 2012 | 124 | 2012 |
| SMiLE-seq identifies binding motifs of single and dimeric transcription factors A Isakova, R Groux, M Imbeault, P Rainer, D Alpern, R Dainese, ... Nature methods 14 (3), 316-322, 2017 | 114 | 2017 |
| Integrative genomics identifies the corepressor SMRT as a gatekeeper of adipogenesis through the transcription factors C/EBPβ and KAISO SK Raghav, SM Waszak, I Krier, C Gubelmann, A Isakova, TS Mikkelsen, ... Molecular cell 46 (3), 335-350, 2012 | 112 | 2012 |
| Automated protein-DNA interaction screening of Drosophila regulatory elements K Hens, JD Feuz, A Isakova, A Iagovitina, A Massouras, J Bryois, ... Nature methods 8 (12), 1065-1070, 2011 | 86 | 2011 |
| A mouse tissue atlas of small noncoding RNA A Isakova, T Fehlmann, A Keller, SR Quake Proceedings of the National Academy of Sciences 117 (41), 25634-25645, 2020 | 65 | 2020 |
| Single-cell quantification of a broad RNA spectrum reveals unique noncoding patterns associated with cell types and states A Isakova, N Neff, SR Quake Proceedings of the National Academy of Sciences 118 (51), e2113568118, 2021 | 46 | 2021 |
| A yeast one‐hybrid and microfluidics‐based pipeline to map mammalian gene regulatory networks C Gubelmann, SM Waszak, A Isakova, W Holcombe, K Hens, A Iagovitina, ... Molecular systems biology 9 (1), 682, 2013 | 37 | 2013 |
| Quantification of cooperativity in heterodimer-DNA binding improves the accuracy of binding specificity models. A Isakova, Y Berset, V Hatzimanikatis, D Bart J Biol Chem., 2016 | 25 | 2016 |
| miRSwitch: detecting microRNA arm shift and switch events F Kern, J Amand, I Senatorov, A Isakova, C Backes, E Meese, A Keller, ... Nucleic Acids Research 48 (W1), W268-W274, 2020 | 21 | 2020 |
| Single cell profiling of total RNA using Smart-seq-total A Isakova, N Neff, SR Quake BioRxiv, 2020.06. 02.131060, 2020 | 18 | 2020 |
| Characterizing expression changes in noncoding RNAs during aging and heterochronic parabiosis across mouse tissues V Wagner, F Kern, O Hahn, N Schaum, N Ludwig, T Fehlmann, A Engel, ... Nature Biotechnology 42 (1), 109-118, 2024 | 10 | 2024 |
| Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy VN Parikh, AG Ioannidis, D Jimenez-Morales, JE Gorzynski, HN De Jong, ... Nature communications 13 (1), 5107, 2022 | 5 | 2022 |
| Serotonin Neurons in the Dorsal and Medial Raphe Nuclei: from Single-Cell Transcriptomes to Whole-Brain Projections J Ren, A Isakova, D Friedmann, J Zeng, S Grutzner, A Pun, GQ Zhao, ... BioRxiv, 674697, 2019 | 3 | 2019 |
| Deconvoluting complex correlates of COVID19 severity with local ancestry inference and viral phylodynamics: Results of a multiomic pandemic tracking strategy VN Parikh, AG Ioannidis, D Jimenez-Morales, JE Gorzynski, HN De Jong, ... medRxiv, 2021.08. 04.21261547, 2021 | 1 | 2021 |
| SMiLE-seq: Selective Microfluidics-based Ligand Enrichment followed by sequencing A Isakova, R Groux, G Ambrosini, P Bucher, B Deplancke | 1 | 2017 |
| Total rna profiling of biological samples and single cells A Isakova, N Neff, SR Quake US Patent App. 17/999,158, 2023 | | 2023 |
| Microfluidic Device and Method for Isolation of Nucleic Acid A Isakova, B Deplancke US Patent App. 15/518,264, 2019 | | 2019 |
