FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool J Brown, M Pirrung, LA McCue Bioinformatics 33 (19), 3137-3139, 2017 | 669 | 2017 |
Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation MG Pachiadaki, E Sintes, K Bergauer, JM Brown, NR Record, BK Swan, ... Science 358 (6366), 1046-1051, 2017 | 257 | 2017 |
Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles R Stepanauskas, EA Fergusson, J Brown, NJ Poulton, B Tupper, ... Nature Communications 8 (1), 84, 2017 | 169 | 2017 |
Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles R Stepanauskas, EA Fergusson, J Brown, NJ Poulton, B Tupper, ... Nature Communications 8 (1), 84, 2017 | 169 | 2017 |
Charting the complexity of the marine microbiome through single-cell genomics MG Pachiadaki, JM Brown, J Brown, O Bezuidt, PM Berube, SJ Biller, ... Cell 179 (7), 1623-1635. e11, 2019 | 165 | 2019 |
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data S Kieser, J Brown, EM Zdobnov, M Trajkovski, LA McCue BMC bioinformatics 21, 1-8, 2020 | 126 | 2020 |
Concurrent alterations in TERT, KDM6A, and the BRCA pathway in bladder cancer ML Nickerson, GM Dancik, KM Im, MG Edwards, S Turan, J Brown, ... Clinical Cancer Research 20 (18), 4935-4948, 2014 | 126 | 2014 |
Rokubacteria: genomic giants among the uncultured bacterial phyla ED Becraft, T Woyke, J Jarett, N Ivanova, JM Brown, MCY Lau, T Onstott, ... Frontiers in microbiology 8, 302970, 2017 | 121 | 2017 |
HITS-CLIP reveals key regulators of nuclear receptor signaling in breast cancer MM Pillai, AE Gillen, TM Yamamoto, E Kline, J Brown, K Flory, ... Breast cancer research and treatment 146, 85-97, 2014 | 92 | 2014 |
ISiCLE: a quantum chemistry pipeline for establishing in silico collision cross section libraries SM Colby, DG Thomas, JR Nuñez, DJ Baxter, KR Glaesemann, JM Brown, ... Analytical chemistry 91 (7), 4346-4356, 2019 | 91 | 2019 |
Genome-wide analysis of miRNA-mRNA interactions in marrow stromal cells I Balakrishnan, X Yang, J Brown, A Ramakrishnan, B Torok-Storb, ... Stem cells 32 (3), 662-673, 2014 | 86 | 2014 |
Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities EM Bottos, DW Kennedy, EB Romero, SJ Fansler, JM Brown, LM Bramer, ... FEMS microbiology ecology 94 (8), fiy110, 2018 | 72 | 2018 |
Samplot: a platform for structural variant visual validation and automated filtering JR Belyeu, M Chowdhury, J Brown, BS Pedersen, MJ Cormier, ... Genome biology 22 (1), 161, 2021 | 67 | 2021 |
De novo structural mutation rates and gamete-of-origin biases revealed through genome sequencing of 2,396 families JR Belyeu, H Brand, H Wang, X Zhao, BS Pedersen, J Feusier, M Gupta, ... The American Journal of Human Genetics 108 (4), 597-607, 2021 | 64 | 2021 |
Effective variant filtering and expected candidate variant yield in studies of rare human disease BS Pedersen, JM Brown, H Dashnow, AD Wallace, M Velinder, ... NPJ Genomic Medicine 6 (1), 60, 2021 | 57 | 2021 |
Pre-incision antibiotic prophylaxis reduces the incidence of post-caesarean surgical site infection J Brown, M Thompson, S Sinnya, A Jeffery, C De Costa, C Woods, ... Journal of Hospital Infection 83 (1), 68-70, 2013 | 54 | 2013 |
Metaphenomic responses of a native prairie soil microbiome to moisture perturbations T Roy Chowdhury, JY Lee, EM Bottos, CJ Brislawn, RA White III, ... Msystems 4 (4), 10.1128/msystems. 00061-19, 2019 | 50* | 2019 |
Identification of essential genes for Escherichia coli aryl polyene biosynthesis and function in biofilm formation I Johnston, LJ Osborn, RL Markley, EA McManus, A Kadam, KB Schultz, ... bioRxiv, 2020.04. 22.055939, 2021 | 37 | 2021 |
Single cell genomics reveals viruses consumed by marine protists JM Brown, JM Labonté, J Brown, NR Record, NJ Poulton, ME Sieracki, ... Frontiers in Microbiology 11, 524828, 2020 | 36 | 2020 |
Spatial distribution of prokaryotic communities in hypersaline soils B Vera-Gargallo, TR Chowdhury, J Brown, SJ Fansler, A Durán-Viseras, ... Scientific Reports 9 (1), 1769, 2019 | 35 | 2019 |