| Growth-limiting intracellular metabolites in yeast growing under diverse nutrient limitations VM Boer, CA Crutchfield, PH Bradley, D Botstein, JD Rabinowitz Molecular biology of the cell 21 (1), 198-211, 2010 | 296 | 2010 |
| Proteobacteria explain significant functional variability in the human gut microbiome PH Bradley, KS Pollard Microbiome 5, 1-23, 2017 | 223 | 2017 |
| Yeast cells can access distinct quiescent states MM Klosinska, CA Crutchfield, PH Bradley, JD Rabinowitz, JR Broach Genes & development 25 (4), 336-349, 2011 | 180 | 2011 |
| Coordinated Concentration Changes of Transcripts and Metabolites in Saccharomyces cerevisiae PH Bradley, MJ Brauer, JD Rabinowitz, OG Troyanskaya PLoS computational biology 5 (1), e1000270, 2009 | 132 | 2009 |
| Automated and accurate estimation of gene family abundance from shotgun metagenomes S Nayfach, PH Bradley, SK Wyman, TJ Laurent, A Williams, JA Eisen, ... PLoS computational biology 11 (11), e1004573, 2015 | 76 | 2015 |
| Host and gut bacteria share metabolic pathways for anti-cancer drug metabolism P Spanogiannopoulos, TS Kyaw, BGH Guthrie, PH Bradley, JV Lee, ... Nature microbiology 7 (10), 1605-1620, 2022 | 68 | 2022 |
| Phylogeny-corrected identification of microbial gene families relevant to human gut colonization PH Bradley, S Nayfach, KS Pollard PLoS computational biology 14 (8), e1006242, 2018 | 44 | 2018 |
| A New System for Comparative Functional Genomics of Saccharomyces Yeasts AA Caudy, Y Guan, Y Jia, C Hansen, C DeSevo, AP Hayes, J Agee, ... Genetics 195 (1), 275-287, 2013 | 37 | 2013 |
| Minor isozymes tailor yeast metabolism to carbon availability PH Bradley, PA Gibney, D Botstein, OG Troyanskaya, JD Rabinowitz Msystems 4 (1), 10.1128/msystems. 00170-18, 2019 | 14 | 2019 |
| Building a chemical blueprint for human blood PH Bradley, KS Pollard Nature 588 (7836), 36-37, 2020 | 6 | 2020 |
| phylogenize: correcting for phylogeny reveals genes associated with microbial distributions PH Bradley, KS Pollard Bioinformatics 36 (4), 1289-1290, 2020 | 4 | 2020 |
| Phylogenetic Portrait of the Saccharomyces cerevisiae Functional Genome PA Gibney, MJ Hickman, PH Bradley, JC Matese, D Botstein G3: Genes, Genomes, Genetics 3 (8), 1335-1340, 2013 | 4 | 2013 |
| Framework for exploring the sensory repertoire of the human gut microbiota PA Ross, W Xu, E Jalomo-Khayrova, G Bange, VM Gumerov, PH Bradley, ... mBio 15 (6), e01039-24, 2024 | 3 | 2024 |
| Berry Supplement-Modified Human Microbiome Improves Immunotherapy Response in Mouse Models S Jahanbahkshi, A Bibi, R Hoyd, C Dravillas, N Williams, S Zhang, ... medRxiv, 2025.01. 16.25320666, 2025 | | 2025 |
| Small amounts of misassembly can have disproportionate effects on pangenome-based metagenomic analyses SN Majernik, L Beaver, PH Bradley bioRxiv, 2024 | | 2024 |
| Adaptive adjustment of significance thresholds produces large gains in microbial gene annotations and metabolic insights K Kananen, I Veseli, CJQ Pérez, S Miller, AM Eren, PH Bradley bioRxiv, 2024 | | 2024 |
| Human xenobiotic metabolism proteins have full-length and split homologs in the gut microbiome M Rendina, PJ Turnbaugh, PH Bradley bioRxiv, 2024.11. 06.622278, 2024 | | 2024 |
| Four-part harmony between diet, drugs, microbes, and host PH Bradley Cell Host & Microbe 31 (5), 689-691, 2023 | | 2023 |
Katherine S PollardDirector, Gladstone Institute of Data Science & Biotechnology / UCSFVerified email at gladstone.ucsf.edu
