Arzucan Ozgur

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	All	Since 2016
Citations	2435	1469
h-index	23	19
i10-index	42	35

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20062007200820092010201120122013201420152016201720182019202020218 8 46 68 123 108 127 119 135 187 237 214 247 320 443 4

Co-authors

Dragomir RadevProfessor, Computer Science, Yale UniversityVerified email at yale.edu
Yongqun HeAssociate Professor of Lab Animal Medicine, Microbiology, Immunology, and Bioinformatics, UniversityVerified email at med.umich.edu
Hakime ÖztürkGerman Cancer Research Center (DKFZ)Verified email at dkfz-heidelberg.de
Elif OzkirimliHead of Data Science and Advanced Analytics, RocheVerified email at boun.edu.tr
Tunga GungorBogazici UniversityVerified email at boun.edu.tr
Junguk HurAssistant ProfessorVerified email at med.und.edu
Gunes ErkanGoogle Inc.Verified email at umich.edu
İlknur KaradenizAssist Prof at Computer Engineering Department, Işık UniversityVerified email at isikun.edu.tr
Tunahan CakirDepartment of Bioengineering, Gebze Technical UniversityVerified email at gtu.edu.tr
Saliha DurmuşGebze Technical UniversityVerified email at gtu.edu.tr
Kutlu O. UlgenProfessor of Chemical Engineering, Bogazici UniversityVerified email at boun.edu.tr
Fatih Erdogan SevilgenGebze Technical UniversityVerified email at gyte.edu.tr
Haluk (O.) BingolProfessor of Computer Engineering, Bogazici UniversityVerified email at boun.edu.tr
Jignesh M. PatelProfessor of Compuer Sciences, University of WisconsinVerified email at cs.wisc.edu
Yuanyuan TianIBM Research - AlmadenVerified email at umich.edu
Vahed QazvinianPraisidio; Google; University of Michigan, Ann ArborVerified email at google.com
Çağıl SönmezBoğaziçi UniversityVerified email at boun.edu.tr
Gizem SoğancıoğluPhd Student, Utrecht UniversityVerified email at uu.nl
Jianyi YangProfessor, Nankai UniversityVerified email at nankai.edu.cn
Wallace KB ChanUniversity of Michigan at Ann ArborVerified email at umich.edu

Arzucan Ozgur

Department of Computer Engineering, Bogazici University

Verified email at boun.edu.tr - Homepage

Bioinformatics Natural Language Processing BioNLP


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Identifying gene-disease associations using centrality on a literature mined gene-interaction network A Özgür, T Vu, G Erkan, DR Radev Bioinformatics 24 (13), i277-i285, 2008	361	2008
Text categorization with class-based and corpus-based keyword selection A Özgür, L Özgür, T Güngör International Symposium on Computer and Information Sciences, 606-615, 2005	177	2005
Semi-supervised classification for extracting protein interaction sentences using dependency parsing G Erkan, A Özgür, D Radev Proceedings of the 2007 Joint Conference on Empirical Methods in Natural …, 2007	164	2007
DeepDTA: deep drug–target binding affinity prediction H Öztürk, A Özgür, E Ozkirimli Bioinformatics 34 (17), i821-i829, 2018	142	2018
Michigan molecular interactions r2: from interacting proteins to pathways VG Tarcea, T Weymouth, A Ade, A Bookvich, J Gao, V Mahavisno, ... Nucleic acids research 37 (suppl_1), D642-D646, 2009	109	2009
PHISTO: pathogen–host interaction search tool S Durmuş Tekir, T Çakır, E Ardıç, AS Sayılırbaş, G Konuk, M Konuk, ... Bioinformatics 29 (10), 1357-1358, 2013	93	2013
Citation summarization through keyphrase extraction V Qazvinian, D Radev, A Özgür Proceedings of the 23rd international conference on computational …, 2010	93	2010
A review on computational systems biology of pathogen–host interactions S Durmuş, T Çakır, A Özgür, R Guthke Frontiers in microbiology 6, 235, 2015	89	2015
Introducing meta-services for biomedical information extraction F Leitner, M Krallinger, C Rodriguez-Penagos, J Hakenberg, C Plake, ... Genome biology 9 (2), 1-11, 2008	87	2008
Detecting speculations and their scopes in scientific text A Özgür, D Radev Proceedings of the 2009 conference on empirical methods in natural language …, 2009	77	2009
Supervised and unsupervised machine learning techniques for text document categorization A Ozgur Unpublished Master’s Thesis, İstanbul: Boğaziçi University, 2004	77	2004
Classification of Beta-Lactamases and Penicillin Binding Proteins Using Ligand-Centric Network Models. H Öztürk, E Ozkirimli, A Özgür PloS one 10 (2), e0117874-e0117874, 2015	61	2015
Improving Named Entity Recognition for Morphologically Rich Languages using Word Embeddings H Demir, A Özgür International Conference on Machine Learning and Applications (ICMLA), 2014	60	2014
BIOSSES: a semantic sentence similarity estimation system for the biomedical domain G Soğancıoğlu, H Öztürk, A Özgür Bioinformatics 33 (14), i49-i58, 2017	59	2017
Mining of vaccine-associated IFN-g gene interaction networks using the Vaccine Ontology A Özgür, Z Xiang, DR Radev, Y He J Biomed Semantics 2 (Suppl 2), 2011	56	2011
GLASS: a comprehensive database for experimentally validated GPCR-ligand associations WKB Chan, H Zhang, J Yang, JR Brender, J Hur, A Özgür, Y Zhang Bioinformatics 31 (18), 3035-3042, 2015	49	2015
A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction H Öztürk, E Ozkirimli, A Özgür BMC bioinformatics 17 (1), 1-11, 2016	47	2016
Co-occurrence network of reuters news A Özgür, B Cetin, H Bingol International Journal of Modern Physics C 19 (05), 689-702, 2008	40	2008
Literature-Based Discovery of IFN-𝛾 and Vaccine-Mediated Gene Interaction Networks A Özgür, Z Xiang, DR Radev, Y He Journal of Biomedicine and Biotechnology 2010, 2010	33	2010
Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining J Hur, A Özgür, Z Xiang, Y He Journal of biomedical semantics 3 (1), 1-15, 2012	32	2012

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